Must copy feature settings from one frame to another as they are not attached ot...

diff --git a/src/jalview/ws/MsaWSClient.java b/src/jalview/ws/MsaWSClient.java
index 59a858e..7d65ceb 100755 (executable)
--- a/src/jalview/ws/MsaWSClient.java
+++ b/src/jalview/ws/MsaWSClient.java
@@ -481,7 +481,7 @@ public class MsaWSClient
           AlignFrame af = new AlignFrame(al);\r
 \r
           //>>>This is a fix for the moment, until a better solution is found!!<<<\r
-          alignFrame.getFeatureRenderer().transferSettings(af.getFeatureRenderer());\r
+          af.getFeatureRenderer().transferSettings(alignFrame.getFeatureRenderer());\r
 \r
           af.addSortByOrderMenuItem(ServiceName + " Ordering",\r
                                     msaorder);\r