PDB viewer</a> help page for more information about the display.</li>
</ul>
+ <p>
+ Additionally, if several of the sequences in the currently selected
+ region of the alignment have associated structures, then Jalview will
+ provide a 'View <em>X</em> structures' entry in the submenu. This
+ option will open a new Jmol view containing all the structures
+ available for all selected sequences, superimposed using the currently
+ selected region of the alignment. (<em>This capability was added
+ in Jalview 2.7</em>)
+ </p>
-<p>To associate PDB files with a sequence, right click on a sequence
+ <p>To associate PDB files with a sequence, right click on a sequence
ID and select "Structure<strong>→</strong> Associate Structure with
Sequence", and one of the submenus:</p>
final PDBEntry[] pe = pdbe.values().toArray(new PDBEntry[pdbe.size()]);
final JMenuItem gpdbview;
structureMenu.add(gpdbview=new JMenuItem("View "+pdbe.size()+" structures."));
+ gpdbview.setToolTipText("Open a new Jmol view with all structures associated with the current selection and superimpose them using the alignment.");
gpdbview.addActionListener(new ActionListener()
{