quaqua: v.8.0 (latest stable) by Randel S Hofer. LGPL and BSD Modified license: downloaded from http://www.randelshofer.ch/quaqua/
-lib/htsjdk-1.120-SNAPSHOT.jar: built from maven master at https://github.com/samtools/htsjdk MIT License to Broad Institute
+lib/htsjdk-1.120-SNAPSHOT.jar: (currently not required for 2.10) built from maven master at https://github.com/samtools/htsjdk MIT License to Broad Institute
+
+lib/biojava-core-4.1.0.jar LGPLv2.1 - latest license at https://github.com/biojava/biojava/blob/master/LICENSE
+
+lib/biojava-ontology-4.1.0.jar LGPLv2.1 - latest license at https://github.com/biojava/biojava/blob/master/LICENSE
Additional dependencies
examples/javascript/jquery*.js : BSD license
examples/javascript/jshashtable-2.1.js : Apache License
-Tools not bundled with Jalview source
-jbake (http://jbake.org MIT license) was used to build the JalviewLite examples pages found in the examples directory.
-
<tr>
<td width="60" nowrap>
<div align="center">
- <strong><a name="Jalview.2.10.0">2.10.0</a><br /> <em>04/10/2016</em></strong>
+ <strong><a name="Jalview.2.10.0">2.10.0</a><br /> <em>06/10/2016</em></strong>
</div>
</td>
<td><em>General</em>
<ul>
<li>
+ <!-- JAL-2124 -->Updated Spanish translations.
+ </li>
+ <li>
<!-- JAL-2164,JAL-1919,JAL-2148 -->Jmol now primary parser
for importing structure data to Jalview. Enables mmCIF and
better PDB parsing.
Ref Fetcher fails to match, or otherwise updates sequence
data from external database records.
</li>
-
+ <li>
+ <!-- JAL-2154 -->Revised Jalview Project format for
+ efficient recovery of sequence coding and alignment
+ annotation relationships.
+ </li>
</ul> <!-- <em>Applet</em>
<ul>
<li>
</li>
<li>
<!-- JAL-2036 -->Enable 'Get Cross-References' in menu
- after fetching cross-references
+ after fetching cross-references, and restoring from project
</li>
<li>
<!-- JAL-2032 -->Mouseover of a copy of a sequence is not
SplitFrame sf = createSplitFrame(dnaFrame, af);
addedToSplitFrames.add(dnaFrame);
addedToSplitFrames.add(af);
+ dnaFrame.setMenusForViewport();
+ af.setMenusForViewport();
if (af.viewport.isGatherViewsHere())
{
gatherTo.add(sf);
Viewport view = candidate.getKey();
Desktop.addInternalFrame(af, view.getTitle(), view.getWidth(),
view.getHeight());
+ af.setMenusForViewport();
System.err.println("Failed to restore view " + view.getTitle()
+ " to split frame");
}