Merge branch 'Tcoffee_JAL-1065' of https://source.jalview.org/git/jalview into test_p...

diff --cc .classpath
index 01cf242,0c39740..cbb8f6b
--- 1/.classpath
--- 2/.classpath
+++ b/.classpath
@@@ -39,7 -41,8 +41,9 @@@
        <classpathentry kind="lib" path="lib/min-jaba-client.jar"/>
        <classpathentry kind="lib" path="lib/commons-codec-1.3.jar"/>
        <classpathentry kind="lib" path="lib/Jmol-12.2.4.jar"/>
 +      <classpathentry kind="lib" path="appletlib/JmolApplet-12.2.4.jar"/>
        <classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin.jar"/>
+       <classpathentry kind="lib" path="appletlib/JmolApplet-12.2.4.jar"/>
+       <classpathentry kind="con" path="org.eclipse.jdt.junit.JUNIT_CONTAINER/4"/>
        <classpathentry kind="output" path="classes"/>
  </classpath>