public interface JalviewJSApi extends JalviewLiteJsApi
{
+ void showOverview();
+
+ /**
+ * process commandline arguments after the JavaScript application has started
+ *
+ * @param args
+ * @return
+ */
Object parseArguments(String[] args);
+
/**
* Open a new Tree panel on the desktop statically. Params are standard (not
* set by Groovy). No dialog is opened.
*
* @param af
+ * may be null
* @param treeType
* @param modelName
* @return null, or the string "label.you_need_at_least_n_sequences" if number
* necessarily using a dialog.
*
* @param af
+ * may be null
* @param modelName
* @return the PCAPanel, or the string "label.you_need_at_least_n_sequences"
* if number of sequences selected is inappropriate