@Test
public void testPfamFormatNoLimits() throws IOException
{
- AlignmentI al = new jalview.io.AppletFormatAdapter().readFile(
- "ASEQ\t...--FFAFAFF--", AppletFormatAdapter.PASTE, "PFAM");
+ AlignmentI al = new jalview.io.AppletFormatAdapter().readFile("ASEQ"
+ + '\t' + "...--FFAFAFF--", AppletFormatAdapter.PASTE, "PFAM");
Assert.assertEquals(1, al.getHeight(), "Wrong number of sequences");
Assert.assertTrue(al.hasValidSequence(),
"Didn't extract limits from PFAM ID");
@Test
public void testPfamFormatValidLimits() throws IOException
{
- AlignmentI al = new jalview.io.AppletFormatAdapter()
- .readFile("ASEQ/15-25\t...--FFAFAFF--",
- AppletFormatAdapter.PASTE, "PFAM");
+ AlignmentI al = new jalview.io.AppletFormatAdapter().readFile(
+ "ASEQ/15-25" + '\t' + "...--FFAFAFF--",
+ AppletFormatAdapter.PASTE, "PFAM");
Assert.assertEquals(1, al.getHeight(), "Wrong number of sequences");
Assert.assertTrue(al.hasValidSequence(),
"Didn't extract limits from PFAM ID");