more genomes!
authorcmzmasek <cmzmasek@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Mon, 13 May 2013 22:03:14 +0000 (22:03 +0000)
committercmzmasek <cmzmasek@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Mon, 13 May 2013 22:03:14 +0000 (22:03 +0000)
forester/data/tol_147.xml

index 70a8797..a275c84 100644 (file)
                                             </taxonomy>\r
                                             <clade>\r
                                               <name>Archosauria &amp; Testudines</name>\r
-                                              <taxonomy>\r
-                                              </taxonomy>\r
                                               <reference doi="10.1038/ng.2615">\r
                                                 <desc>The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan</desc>\r
                                               </reference>\r
                                               </taxonomy>\r
                                               <clade>\r
                                                 <taxonomy>\r
+                                                  <id provider="uniprot">7215</id>\r
+                                                  <scientific_name>Drosophila</scientific_name>\r
+                                                  <common_name>fruit flies</common_name>\r
+                                                  <rank>genus</rank>\r
+                                                </taxonomy>\r
+                                                <reference doi="10.1534/genetics.111.126540">\r
+                                                  <desc>The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research</desc>\r
+                                                </reference>\r
+                                                <clade>\r
+                                                  <taxonomy>\r
+                                                    <id provider="uniprot">32341</id>\r
+                                                    <scientific_name>Sophophora</scientific_name>\r
+                                                    <rank>subgenus</rank>\r
+                                                  </taxonomy>\r
+                                                  <clade>\r
+                                                    <name>melanogaster &amp; pseudoobscura subgroups</name>\r
+                                                    <clade>\r
+                                                      <taxonomy>\r
+                                                        <id provider="uniprot">32346</id>\r
+                                                        <scientific_name>melanogaster group</scientific_name>\r
+                                                      </taxonomy>\r
+                                                      <clade>\r
+                                                        <taxonomy>\r
+                                                          <id provider="uniprot">32351</id>\r
+                                                          <scientific_name>melanogaster subgroup</scientific_name>\r
+                                                        </taxonomy>\r
+                                                        <clade>\r
+                                                          <name>DROSE &amp; DROSI &amp; DROME &amp; DROYA</name>\r
+                                                          <clade>\r
+                                                            <name>DROSE &amp; DROSI &amp; DROME</name>\r
+                                                            <clade>\r
+                                                              <name>DROSE &amp; DROSI</name>\r
+                                                              <clade>\r
+                                                                <taxonomy>\r
+                                                                  <id provider="uniprot">7238</id>\r
+                                                                  <code>DROSE</code>\r
+                                                                  <scientific_name>Drosophila sechellia</scientific_name>\r
+                                                                  <common_name>Fruit fly</common_name>\r
+                                                                  <rank>species</rank>\r
+                                                                </taxonomy>\r
+                                                              </clade>\r
+                                                              <clade>\r
+                                                                <taxonomy>\r
+                                                                  <id provider="uniprot">7240</id>\r
+                                                                  <code>DROSI</code>\r
+                                                                  <scientific_name>Drosophila simulans</scientific_name>\r
+                                                                  <common_name>Fruit fly</common_name>\r
+                                                                  <rank>species</rank>\r
+                                                                </taxonomy>\r
+                                                              </clade>\r
+                                                            </clade>\r
+                                                            <clade>\r
+                                                              <taxonomy>\r
+                                                                <id provider="uniprot">7227</id>\r
+                                                                <code>DROME</code>\r
+                                                                <scientific_name>Drosophila melanogaster</scientific_name>\r
+                                                                <common_name>Fruit fly</common_name>\r
+                                                                <rank>species</rank>\r
+                                                                <uri>http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg</uri>\r
+                                                              </taxonomy>\r
+                                                            </clade>\r
+                                                          </clade>\r
+                                                          <clade>\r
+                                                            <taxonomy>\r
+                                                              <id provider="uniprot">7245</id>\r
+                                                              <code>DROYA</code>\r
+                                                              <scientific_name>Drosophila yakuba</scientific_name>\r
+                                                              <common_name>Fruit fly</common_name>\r
+                                                              <rank>species</rank>\r
+                                                            </taxonomy>\r
+                                                          </clade>\r
+                                                        </clade>\r
+                                                        <clade>\r
+                                                          <taxonomy>\r
+                                                            <id provider="uniprot">7220</id>\r
+                                                            <code>DROER</code>\r
+                                                            <scientific_name>Drosophila erecta</scientific_name>\r
+                                                            <common_name>Fruit fly</common_name>\r
+                                                            <rank>species</rank>\r
+                                                          </taxonomy>\r
+                                                        </clade>\r
+                                                      </clade>\r
+                                                      <clade>\r
+                                                        <taxonomy>\r
+                                                          <id provider="uniprot">7217</id>\r
+                                                          <code>DROAN</code>\r
+                                                          <scientific_name>Drosophila ananassae</scientific_name>\r
+                                                          <common_name>Fruit fly</common_name>\r
+                                                          <rank>species</rank>\r
+                                                        </taxonomy>\r
+                                                      </clade>\r
+                                                    </clade>\r
+                                                    <clade>\r
+                                                      <taxonomy>\r
+                                                        <id provider="uniprot">32358</id>\r
+                                                        <scientific_name>pseudoobscura subgroup</scientific_name>\r
+                                                      </taxonomy>\r
+                                                      <clade>\r
+                                                        <taxonomy>\r
+                                                          <id provider="uniprot">7234</id>\r
+                                                          <code>DROPE</code>\r
+                                                          <scientific_name>Drosophila persimilis</scientific_name>\r
+                                                          <common_name>Fruit fly</common_name>\r
+                                                          <rank>species</rank>\r
+                                                        </taxonomy>\r
+                                                      </clade>\r
+                                                      <clade>\r
+                                                        <taxonomy>\r
+                                                          <id provider="uniprot">46245</id>\r
+                                                          <code>DROPS</code>\r
+                                                          <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>\r
+                                                          <common_name>Fruit fly</common_name>\r
+                                                          <rank>subspecies</rank>\r
+                                                          <uri>http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg</uri>\r
+                                                        </taxonomy>\r
+                                                      </clade>\r
+                                                    </clade>\r
+                                                  </clade>\r
+                                                  <clade>\r
+                                                    <taxonomy>\r
+                                                      <id provider="uniprot">7260</id>\r
+                                                      <code>DROWI</code>\r
+                                                      <scientific_name>Drosophila willistoni</scientific_name>\r
+                                                      <common_name>Fruit fly</common_name>\r
+                                                      <rank>species</rank>\r
+                                                    </taxonomy>\r
+                                                  </clade>\r
+                                                </clade>\r
+                                                <clade>\r
+                                                  <name>Drosophila subgenus &amp; Hawaiian Drosophila</name>\r
+                                                  <clade>\r
+                                                    <taxonomy>\r
+                                                      <scientific_name>Drosophila</scientific_name>\r
+                                                      <rank>subgenus</rank>\r
+                                                    </taxonomy>\r
+                                                    <clade>\r
+                                                      <taxonomy>\r
+                                                        <id provider="uniprot">7230</id>\r
+                                                        <code>DROMO</code>\r
+                                                        <scientific_name>Drosophila mojavensis</scientific_name>\r
+                                                        <common_name>Fruit fly</common_name>\r
+                                                        <rank>species</rank>\r
+                                                      </taxonomy>\r
+                                                    </clade>\r
+                                                    <clade>\r
+                                                      <taxonomy>\r
+                                                        <id provider="uniprot">7244</id>\r
+                                                        <code>DROVI</code>\r
+                                                        <scientific_name>Drosophila virilis</scientific_name>\r
+                                                        <common_name>Fruit fly</common_name>\r
+                                                        <rank>species</rank>\r
+                                                      </taxonomy>\r
+                                                    </clade>\r
+                                                  </clade>\r
+                                                  <clade>\r
+                                                    <taxonomy>\r
+                                                      <id provider="uniprot">7222</id>\r
+                                                      <code>DROGR</code>\r
+                                                      <scientific_name>Drosophila grimshawi</scientific_name>\r
+                                                      <common_name>Fruit fly</common_name>\r
+                                                      <synonym>Idiomyia grimshawi</synonym>\r
+                                                      <rank>species</rank>\r
+                                                      <uri>http://www.pacificislandbooks.com/fruitf~1.jpg</uri>\r
+                                                    </taxonomy>\r
+                                                  </clade>\r
+                                                </clade>\r
+                                              </clade>\r
+                                              <clade>\r
+                                                <taxonomy>\r
                                                   <id provider="uniprot">7157</id>\r
                                                   <scientific_name>Culicidae</scientific_name>\r
                                                   <common_name>mosquitos</common_name>\r
                                                   </taxonomy>\r
                                                 </clade>\r
                                               </clade>\r
-                                              <clade>\r
-                                                <taxonomy>\r
-                                                  <id provider="uniprot">32341</id>\r
-                                                  <scientific_name>Sophophora</scientific_name>\r
-                                                  <rank>subgenus</rank>\r
-                                                </taxonomy>\r
-                                                <clade>\r
-                                                  <taxonomy>\r
-                                                    <id provider="uniprot">7227</id>\r
-                                                    <code>DROME</code>\r
-                                                    <scientific_name>Drosophila melanogaster</scientific_name>\r
-                                                    <common_name>Fruit fly</common_name>\r
-                                                    <rank>species</rank>\r
-                                                    <uri>http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg</uri>\r
-                                                  </taxonomy>\r
-                                                </clade>\r
-                                                <clade>\r
-                                                  <name>DROPS</name>\r
-                                                  <taxonomy>\r
-                                                    <id provider="uniprot">46245</id>\r
-                                                    <code>DROPS</code>\r
-                                                    <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>\r
-                                                    <common_name>Fruit fly</common_name>\r
-                                                    <rank>subspecies</rank>\r
-                                                    <uri>http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg</uri>\r
-                                                  </taxonomy>\r
-                                                </clade>\r
-                                              </clade>\r
                                             </clade>\r
                                             <clade>\r
                                               <name>BOMMO</name>\r