import jalview.api.AlignmentViewPanel;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.AlignmentI;
-import jalview.datamodel.Annotation;
-import jalview.datamodel.SequenceGroup;
import jalview.datamodel.SequenceI;
import jalview.gui.AlignFrame;
import jalview.workers.AlignCalcWorker;
* reconfigure and restart the AAConsClient. This method will spawn a new
* thread that will wait until any current jobs are finished, modify the
* parameters and restart the conservation calculation with the new values.
- *
+ *
* @param newpreset
* @param newarguments
*/
}
+ @Override
public void updateAnnotation()
{
updateResultAnnotation(false);
seqs.set(p, new compbio.data.sequence.FastaSequence(sq.getId(), new String(padded)));
}
}
-
+
}
return seqs;
}
/**
* notify manager that we have started, and wait for a free calculation slot
- *
+ *
* @return true if slot is obtained and work still valid, false if another
* thread has done our work for us.
*/