Use i, not index if not representedSeqs

diff --git a/src/jalview/appletgui/APopupMenu.java b/src/jalview/appletgui/APopupMenu.java
index dca9da4..b3c8f20 100755 (executable)
--- a/src/jalview/appletgui/APopupMenu.java
+++ b/src/jalview/appletgui/APopupMenu.java
@@ -639,7 +639,7 @@ public class APopupMenu
         }\r
         else if(!representGroup)\r
         {\r
-          hseqs[index++] = sg.getSequenceAt(index);\r
+          hseqs[index++] = sg.getSequenceAt(i);\r
         }\r
         }\r
 \r

diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java
index c2bf729..88ea11b 100755 (executable)
--- a/src/jalview/gui/PopupMenu.java
+++ b/src/jalview/gui/PopupMenu.java
@@ -1145,7 +1145,7 @@ public class PopupMenu extends JPopupMenu
           }\r
           else if(!representGroup)\r
           {\r
-            hseqs[index++] = sg.getSequenceAt(index);\r
+            hseqs[index++] = sg.getSequenceAt(i);\r
           }\r
         }\r
 \r