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Modified output to reduce HTML file size
authoramwaterhouse <Andrew Waterhouse>
Wed, 1 Dec 2004 17:04:03 +0000 (17:04 +0000)
committeramwaterhouse <Andrew Waterhouse>
Wed, 1 Dec 2004 17:04:03 +0000 (17:04 +0000)
src/jalview/io/HTMLOutput.java patch | blob | history

diff --git a/src/jalview/io/HTMLOutput.java b/src/jalview/io/HTMLOutput.java
index 8eef36f..b42547a 100755 (executable)
--- a/src/jalview/io/HTMLOutput.java
+++ b/src/jalview/io/HTMLOutput.java
@@ -29,7 +29,8 @@ public class HTMLOutput
         out.println("<HTML>");\r
         out.println("<style type=\"text/css\">");\r
         out.println("<!--");\r
-        out.println("td {font-family: \"Courier New\", Courier, mono; font-size: medium;}");\r
+        out.println("td {font-family: \"Courier New\", Courier, mono; font-size: medium;");\r
+        out.println("  font-size: medium; text-align: center; }");\r
         out.println("-->");\r
         out.println("</style>");\r
         out.println("<BODY>");\r
@@ -45,22 +46,29 @@ public class HTMLOutput
           for (int res = 0; res < seq.getLength(); res++)\r
           {\r
             color = sr.getResidueBoxColour(cs, seq, res);\r
-            Integer.toHexString(color.getRed());\r
 \r
-            out.println("<td bgcolor=\"#"\r
+            if(color.getRGB()<-1)\r
+            {\r
+              out.println("<td bgcolor=\"#"\r
                         + Integer.toHexString(color.getRed())\r
                         + Integer.toHexString(color.getGreen())\r
                         + Integer.toHexString(color.getBlue())\r
-                        +"\"><center>"+seq.getCharAt(res)+"</center></td>");\r
+                        + "\">"+seq.getCharAt(res)+"</td>");\r
+            }\r
+            else\r
+              out.println("<td>"+seq.getCharAt(res)+"</td>");\r
+\r
           }\r
 \r
           out.println("</tr>");\r
         }\r
         //////////////\r
-        out.println("</td></tr></table>");\r
-        out.println("</table>\n</body>\n</html>");\r
+        out.println("</table>");\r
+        out.println("</td></tr></table>\n</body>\n</html>");\r
 \r
         out.close();\r
+\r
+        jalview.util.BrowserLauncher.openURL( choice );\r
       }\r
       catch(Exception ex){}\r
     }\r