==== Note ====
-Either output of all vs. all ortholgy support with -t=`<`output table`>`and/or output for
-one query sequence with -q and a `[`outfile`]` are required.
+Either output of all vs. all ortholgy support with -t=`<`output table`>` and/or output for one query sequence with -q and a `[`outfile`]` are required.
==== Sort ====
`rio gene_trees.nh species.xml -t=outtable`
-<wiki:comment>
=== Example files ===
- * [http://forester.googlecode.com/files/wnt_gene_tree.xml gene tree]
- * [http://forester.googlecode.com/files/species.xml species tree]
- * [http://forester.googlecode.com/files/wnt_gsdi_log.txt log file (output)]
-</wiki:comment>
+ * [http://forester.googlecode.com/files/gene_trees_rio.nh gene trees file]
+ * [http://forester.googlecode.com/files/species_tree_rio.xml species tree file]
+ * [http://forester.googlecode.com/files/rio_outfile.txt output, for query "D_HUMAN"]
+
== References ==