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JAL-1667_1668 Documentation - Added a separate help file for the Structure Chooser...
authortcofoegbu <tcnofoegbu@dundee.ac.uk>
Tue, 21 Apr 2015 10:28:48 +0000 (11:28 +0100)
committertcofoegbu <tcnofoegbu@dundee.ac.uk>
Tue, 21 Apr 2015 10:28:48 +0000 (11:28 +0100)
help/html/features/schooser_main.png [new file with mode: 0644] patch | blob
help/html/features/structurechooser.html [new file with mode: 0644] patch | blob

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+<html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
+<head>
+<title>Structure Chooser</title>
+</head>
+
+<body>
+       <p>
+               <strong>Structure Chooser</strong>
+       </p>
+
+       The Structure Chooser panel was added in Jalview 2.8.3. It
+       introduced a smarter technique for selecting PDB structures to view in
+       Jalview by quering readily available meta-data of the structures. Some of the main features it provides are listed below:
+       <ul>
+               <li>Automatic discovery, retrieval and association of PDB entries
+                       for an alignment's sequences</li>
+               <li>Visualisation of discovered structures' meta-data</li>
+               <li>Ability to configure the meta-data entries to visualise</li>
+               <li>Auto-selection  of the best structure via filtering by
+                       the available metric parameters in the meta-data (i.e. resolution,
+                       quality etc).</li>
+               <li>Selection of multiple structures in a single operation</li>
+       </ul>
+       Additionally, the Structure Chooser retains the following contemporary
+       feature of Jalview:
+       <ul>
+               <li>Manual association of PDB entries via entering the PDB Id or
+                       From File</li>
+               <li>Ability to view cached PDB entries</li>
+       </ul>
+
+       <p><img src="schooser_main.png" style="width: 464px; height: 369px; ">
+       <!-- <p><img src="schooser_config.png" style="width: 463px; height: 369px; ">
+       <p><img src="schooser_drop-down.png" style="width: 464px; height: 368px; ">
+       <p><img src="schooser_enter-id.png" style="width: 467px; height: 373px; ">
+       <p><img src="schooser_from-file.png" style="width: 468px; height: 370px; ">
+       <p><img src="schooser_cached.png"> -->
+       <br>
+       
+       <strong>Auto-Selection of Structures</strong>
+       
+</body>
+</html>
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