@Attributes(required = true, description = "Serial version identifier for <b>BioJSON</b> schema")
private String svid = "1.0";
- @Attributes(required = true, minItems = 1, maxItems = 1999999999, description = "A sequence group is a bracket of alignment residues spanning <br>across multiple columns and rows. These can be treated as a <br>sub-alignments.")
+ @Attributes(
+ required = true,
+ minItems = 1,
+ maxItems = 2147483647,
+ description = "A sequence group is a bracket of alignment residues spanning <br>across multiple columns and rows. These can be treated as a <br>sub-alignments.")
private List<SequencePojo> seqs = new ArrayList<SequencePojo>();
- @Attributes(required = false, minItems = 0, maxItems = 1999999999, exclusiveMaximum=true, description = "Alignment annotations stores symbols and graphs usually rendered </br>below the alignment.")
+ @Attributes(
+ required = false,
+ minItems = 0,
+ maxItems = 2147483647,
+ exclusiveMaximum = true,
+ description = "Alignment annotations stores symbols and graphs usually rendered </br>below the alignment.")
private List<AlignmentAnnotationPojo> alignAnnotation = new ArrayList<AlignmentAnnotationPojo>();
- @Attributes(required = false, minItems = 0, maxItems = 1999999999, description = "A sequence group is a bracket of alignment residues spanning <br>across multiple columns and rows. These can be treated as a <br>sub-alignments.")
+ @Attributes(
+ required = false,
+ minItems = 0,
+ maxItems = 2147483647,
+ description = "A sequence group is a bracket of alignment residues spanning <br>across multiple columns and rows. These can be treated as a <br>sub-alignments.")
private List<SequenceGrpPojo> seqGroups = new ArrayList<SequenceGrpPojo>();
- @Attributes(required = false, minItems = 0, maxItems = 1999999999, description = "Sequence features are associated with sequences rather than <br>alignments. A sequence feature can span across multiple <br>sequences in an alignment. They indicate features generated <br>by the same analysis process or retrieved from the same database <br>(such as Uniprot features).")
+ @Attributes(
+ required = false,
+ minItems = 0,
+ maxItems = 2147483647,
+ description = "Sequence features are associated with sequences rather than <br>alignments. A sequence feature can span across multiple <br>sequences in an alignment. They indicate features generated <br>by the same analysis process or retrieved from the same database <br>(such as Uniprot features).")
private List<SequenceFeaturesPojo> seqFeatures = new ArrayList<SequenceFeaturesPojo>();
@Attributes(required = false, enums = { "None", "Custom", "Clustal",
public void setGlobalColorScheme(String globalColorScheme)
{
-// this.appSettings.put("globalColorScheme", globalColorScheme);
+ this.appSettings.put("globalColorScheme", globalColorScheme);
}
public String getColourScheme()
@Attributes(required = true, description = "End residue position for the sequence feature")
private int xEnd;
- @Attributes(required = true, minItems = 1, maxItems = 1999999999, description = "Reference to the sequence in the alignment<br> (more like a foreign key)")
+ @Attributes(
+ required = true,
+ minItems = 1,
+ maxItems = 2147483647,
+ description = "Reference to the sequence in the alignment<br> (more like a foreign key)")
private String sequenceRef;
@Attributes(required = true, description = "The name or type of the SequenceFeature")
@Attributes(required = true, description = "The index of the group’s last residue in the alignment space")
private int endRes;
- @Attributes(required = true, minItems = 1, maxItems = 1999999999, uniqueItems=true, description = "An array of the unique id's for the sequences belonging to the group")
+ @Attributes(
+ required = true,
+ minItems = 1,
+ maxItems = 2147483647,
+ uniqueItems = true,
+ description = "An array of the unique id's for the sequences belonging to the group")
private ArrayList<String> sequenceRefs = new ArrayList<String>();
public String getColourScheme()
@Attributes(required = true, description = "Serial version identifier for the <b>seqs</b> object model")
private String svid = "1.0";
- @Attributes(required = true,minLength=3,maxLength=1999999999, description = "Sequence residue characters. An aligned sequence may contain <br>one of the following gap characters “.”, “-” or “ ”")
+ @Attributes(
+ required = true,
+ minLength = 3,
+ maxLength = 2147483647,
+ description = "Sequence residue characters. An aligned sequence may contain <br>one of the following gap characters “.”, “-” or “ ”")
private String seq;
@Attributes(required = true, description = "Sequence name")
git://source.jalview.org / jalview.git / commitdiff