JAL-3420 JAL-3394 Correct format of XML in added file extensions for install4j8....

diff --git a/build.gradle b/build.gradle
index 6024b84..8d84b25 100644 (file)
--- a/build.gradle
+++ b/build.gradle
@@ -1118,6 +1118,14 @@ task copyInstall4jTemplate(type: Copy) {
     }
   }
   into install4jDir
+
+  inputs.files(i4jTemplate)
+  if (install4jVersion >= 8) {
+    inputs.files(install4jDir+"/"+install4j8InstallerFileAssociations)
+  } else {
+    inputs.files(install4jDir+"/"+install4jInstallerFileAssociations)
+    inputs.files(install4jDir+"/"+install4jInfoPlistFileAssociations)
+  }
   outputs.files(install4jConf)
 
   doLast {

diff --git a/utils/install4j/Jalview-File.png b/utils/install4j/Jalview-File.png
new file mode 100644 (file)
index 0000000..1d98699
Binary files /dev/null and b/utils/install4j/Jalview-File.png differ

diff --git a/utils/install4j/Jalview-Launch.icns b/utils/install4j/Jalview-Launch.icns
new file mode 100644 (file)
index 0000000..506b5a1
Binary files /dev/null and b/utils/install4j/Jalview-Launch.icns differ

diff --git a/utils/install4j/Jalview-Launch.ico b/utils/install4j/Jalview-Launch.ico
new file mode 100644 (file)
index 0000000..4a2545b
Binary files /dev/null and b/utils/install4j/Jalview-Launch.ico differ

diff --git a/utils/install4j/Jalview-Launch.png b/utils/install4j/Jalview-Launch.png
new file mode 100644 (file)
index 0000000..cb2ce97
Binary files /dev/null and b/utils/install4j/Jalview-Launch.png differ

diff --git a/utils/install4j/JalviewVersionLocator.png b/utils/install4j/JalviewVersionLocator.png
deleted file mode 100644 (file)
index 9441080..0000000
Binary files a/utils/install4j/JalviewVersionLocator.png and /dev/null differ

diff --git a/utils/install4j/auto_file_associations-i4j8.pl b/utils/install4j/auto_file_associations-i4j8.pl
index c8299f6..9a607c6 100755 (executable)
--- a/utils/install4j/auto_file_associations-i4j8.pl
+++ b/utils/install4j/auto_file_associations-i4j8.pl
@@ -38,7 +38,7 @@ my $add_associations = {
   features => {shortname=>"features",name=>"Jalview Features",extensions=>["features","jvfeatures"]},
   annotations => {shortname=>"annotations",name=>"Jalview Annotations",extensions=>["annotations","jvannotations"]},
   mmcif2 => {shortname=>"mmcif2",name=>"mmCIF",extensions=>["mcif","mmcif"]},
-  jvl => {shortname=>"jvl",name=>"Jalview Version Locator",extensions=>["jvl"],iconfile=>"Jalview-Version-Locator"},
+  jvl => {shortname=>"jvl",name=>"Jalview Launch",extensions=>["jvl"],iconfile=>"Jalview-Launch"},
   jnet => {shortname=>"jnet",name=>"JnetFile",extensions=>["concise","jnet"]},
   scorematrix => {shortname=>"scorematrix",name=>"Substitution Matrix",extensions=>["mat"]},
 };
@@ -50,16 +50,31 @@ my @put_first = qw(jalview jvl);
 my $v = ($i4jversion >= 8)?$i4jversion:"";
 my $i4jtemplatefile = "file_associations_template-install4j${v}.xml";
 my $i4jtemplate;
-open(IT,"<$i4jtemplatefile") or dir("Could not open '$i4jtemplatefile' for reading");
+my $mactemplatefile = "file_associations_template-Info_plist.xml";
+my $mactemplate;
+
+open(MT,"<$mactemplatefile") or die("Could not open '$mactemplatefile' for reading");
+while(<MT>){
+  $mactemplate .= $_;
+}
+close(MT);
+open(IT,"<$i4jtemplatefile") or die("Could not open '$i4jtemplatefile' for reading");
 while(<IT>){
   $i4jtemplate .= $_;
 }
 close(IT);
+my $macauto;
 my $i4jauto;
 
+my $macautofile = $mactemplatefile;
+$macautofile =~ s/template/auto$1/;
+
 my $i4jautofile = $i4jtemplatefile;
 $i4jautofile =~ s/template/auto$1/;
 
+open(MA,">$macautofile") or die ("Could not open '$macautofile' for writing");
+print MA "<key>CFBundleDocumentTypes</key>\n<array>\n\n";
+
 open(IA,">$i4jautofile") or die ("Could not open '$i4jautofile' for writing");
 
 open(IN, "<$fileformats") or die ("Could not open '$fileformats' for reading");
@@ -74,7 +89,7 @@ while(my $line = <IN>) {
     my $name = $2;
     my $extensions = $3;
     $extensions =~ s/\s+//g;
-    my @possextensions = split(m/,/,$extensions);
+    my @possextensions = map(lc($_),split(m/,/,$extensions));
     my @extensions;
     my $addext = $add_extensions->{$shortname};
     if (ref($addext) eq "ARRAY") {
@@ -98,16 +113,36 @@ close(IN);
 
 my %all_associations = (%$file_associations, %$add_associations);
 
-for my $shortname (@put_first, sort keys %all_associations) {
-  my $a = $all_associations{$shortname};
-  if (ref($a) ne "HASH") {
-    next;
+my $num = 0;
+my $i4jcount = 0;
+my @ordered = @put_first;
+for my $key (sort keys %all_associations) {
+  next if grep($_ eq $key, @ordered);
+  push(@ordered, $key);
+}
+for my $key (@ordered) {
+  my $a = $all_associations{$key};
+  next if (ref($a) ne "HASH");
+
+  my $extensions = $a->{extensions};
+  my @extensions = @$extensions;
+  for my $ext (@extensions) {
+    $num++;
   }
+  #delete $all_associations{$shortname};
+  #print "NUM: $num\n";
+}
+
+
+for my $shortname (@ordered) {
+  my $a = $all_associations{$shortname};
+  next if (ref($a) ne "HASH");
 
   my $name = $a->{name};
   my $extensions = $a->{extensions};
   my $mimetype = $mimetypes->{$shortname};
-  $mimetype = "text/x-$shortname" unless $mimetype;
+  $mimetype = "application/x-$shortname+txt" unless $mimetype;
+  #$mimetype = "application/x-$shortname" unless $mimetype;
 
   my $iconfile = $a->{iconfile};
   $iconfile = "Jalview-File" unless $iconfile;
@@ -115,18 +150,50 @@ for my $shortname (@put_first, sort keys %all_associations) {
   my @extensions = @$extensions;
   #warn("LINE: $line\nFound extensions '".join("', '", @extensions)."' for $name Files ($shortname)'n");
 
-  my $i4jentry = $i4jtemplate;
+  my $xname = xml_escape($name);
+  my $xmimetype = xml_escape($mimetype);
+  my $xshortname = xml_escape($shortname);
+  my $xiconfile = xml_escape($iconfile);
+
+  my $macentry = $mactemplate;
+  $macentry =~ s/\$\$NAME\$\$/$xname/g;
+  $macentry =~ s/\$\$SHORTNAME\$\$/$xshortname/g;
+  $macentry =~ s/\$\$MIMETYPE\$\$/$xmimetype/g;
+  $macentry =~ s/\$\$ICONFILE\$\$/$xiconfile/g;
+  while ($macentry =~ m/\$\$([^\$]*)EXTENSIONS([^\$]*)\$\$/) {
+    my $pre = $1;
+    my $post = $2;
+    my $macextensions;
+    for my $ext (@extensions) {
+      my $xext = xml_escape($ext);
+      $macextensions .= $pre.$xext.$post;
+    }
+    $macentry =~ s/\$\$${pre}EXTENSIONS${post}\$\$/$macextensions/g;
+  }
+  print MA $macentry;
 
-  $i4jentry =~ s/\$\$NAME\$\$/$name/g;
-  $i4jentry =~ s/\$\$SHORTNAME\$\$/$shortname/g;
-  $i4jentry =~ s/\$\$MIMETYPE\$\$/$mimetype/g;
-  $i4jentry =~ s/\$\$ICONFILE\$\$/$iconfile/g;
+  my $i4jentry = $i4jtemplate;
+  $i4jentry =~ s/\$\$NAME\$\$/$xname/g;
+  $i4jentry =~ s/\$\$SHORTNAME\$\$/$xshortname/g;
+  $i4jentry =~ s/\$\$MIMETYPE\$\$/$xmimetype/g;
+  $i4jentry =~ s/\$\$ICONFILE\$\$/$xiconfile/g;
 
   for my $ext (@extensions) {
+    $i4jcount++;
+    #print "COUNT: $i4jcount\n";
+    my $progresspercent = int(($i4jcount/$num)*100);
+    #print "PC: $progresspercent\n";
+    $progresspercent = 100 if $progresspercent > 100;
+    my $xext = xml_escape($ext);
     my $i4jextentry = $i4jentry;
-    $i4jextentry =~ s/\$\$EXTENSION\$\$/$ext/g;
+    $i4jextentry =~ s/\$\$EXTENSION\$\$/$xext/g;
+    $i4jextentry =~ s/\$\$PROGRESSPERCENT\$\$/$progresspercent/g;
     $i4jextentry =~ s/\$\$ID\$\$/$id/g;
     $id++;
+    $i4jextentry =~ s/\$\$ID1\$\$/$id/g;
+    $id++;
+    $i4jextentry =~ s/\$\$ID2\$\$/$id/g;
+    $id++;
 
     print IA $i4jextentry;
   }
@@ -135,3 +202,12 @@ for my $shortname (@put_first, sort keys %all_associations) {
 }
 
 close(IA);
+print MA "</array>\n";
+close(MA);
+
+sub xml_escape {
+  my $x = shift;
+  # stolen from Pod::Simple::XMLOutStream in base distro
+  $x =~ s/([^-\n\t !\#\$\%\(\)\*\+,\.\~\/\:\;=\?\@\[\\\]\^_\`\{\|\}abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789])/'&#'.(ord($1)).';'/eg;
+  return $x;
+}  

diff --git a/utils/install4j/file_associations_auto-Info_plist.xml b/utils/install4j/file_associations_auto-Info_plist.xml
index da2633b..5922f2d 100644 (file)
--- a/utils/install4j/file_associations_auto-Info_plist.xml
+++ b/utils/install4j/file_associations_auto-Info_plist.xml
@@ -26,9 +26,9 @@
 <string>jvl</string>
 </array>
 <key>CFBundleTypeName</key>
-<string>Jalview Version Locator File</string>
+<string>Jalview Launch File</string>
 <key>CFBundleTypeIconFile</key>
-<string>Jalview-Version-Locator.icns</string>
+<string>Jalview-Launch.icns</string>
 <key>CFBundleTypeRole</key>
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
@@ -52,7 +52,7 @@
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>text/x-amsa</string>
+<string>application/x-amsa+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -100,7 +100,6 @@
 <dict>
 <key>CFBundleTypeExtensions</key>
 <array>
-<string>BLC</string>
 <string>blc</string>
 </array>
 <key>CFBundleTypeName</key>
@@ -111,7 +110,7 @@
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>text/x-blc</string>
+<string>application/x-blc+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -130,7 +129,7 @@
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>text/x-clustal</string>
+<string>application/x-clustal+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -150,7 +149,7 @@
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>text/x-fasta</string>
+<string>application/x-fasta+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -189,7 +188,7 @@
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>text/x-gff2</string>
+<string>application/x-gff2+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -208,7 +207,7 @@
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>text/x-gff3</string>
+<string>application/x-gff3+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -286,7 +285,7 @@
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>text/x-msf</string>
+<string>application/x-msf+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -325,7 +324,7 @@
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>text/x-pfam</string>
+<string>application/x-pfam+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -344,7 +343,7 @@
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>text/x-phylip</string>
+<string>application/x-phylip+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -363,7 +362,7 @@
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>text/x-pileup</string>
+<string>application/x-pileup+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -382,7 +381,7 @@
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>text/x-pir</string>
+<string>application/x-pir+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>
@@ -440,7 +439,7 @@
 <string>Editor</string>
 <key>CFBundleTypeMIMETypes</key>
 <array>
-<string>text/x-stockholm</string>
+<string>application/x-stockholm+txt</string>
 </array>
 <key>LSIsAppleDefaultForType</key>
 <true/>

diff --git a/utils/install4j/file_associations_auto-install4j8.xml b/utils/install4j/file_associations_auto-install4j8.xml
index ab44bb5..52438d1 100644 (file)
--- a/utils/install4j/file_associations_auto-install4j8.xml
+++ b/utils/install4j/file_associations_auto-install4j8.xml
@@ -1,682 +1,1260 @@
-              <action id="10000" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jvp file association">
-                <serializedBean>
-                  <property name="description" type="string">Jalview File</property>
-                  <property name="extension" type="string">jvp</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10001" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jvl file association">
-                <serializedBean>
-                  <property name="description" type="string">Jalview Version Locator File</property>
-                  <property name="extension" type="string">jvl</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-Version-Locator.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-Version-Locator.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10002" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .amsa file association">
-                <serializedBean>
-                  <property name="description" type="string">AMSA File</property>
-                  <property name="extension" type="string">amsa</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10003" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .annotations file association">
-                <serializedBean>
-                  <property name="description" type="string">Jalview Annotations File</property>
-                  <property name="extension" type="string">annotations</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10004" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jvannotations file association">
-                <serializedBean>
-                  <property name="description" type="string">Jalview Annotations File</property>
-                  <property name="extension" type="string">jvannotations</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10005" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .biojson file association">
-                <serializedBean>
-                  <property name="description" type="string">BioJSON File</property>
-                  <property name="extension" type="string">biojson</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10006" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .BLC file association">
-                <serializedBean>
-                  <property name="description" type="string">BLC File</property>
-                  <property name="extension" type="string">BLC</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10007" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .blc file association">
-                <serializedBean>
-                  <property name="description" type="string">BLC File</property>
-                  <property name="extension" type="string">blc</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10008" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .aln file association">
-                <serializedBean>
-                  <property name="description" type="string">Clustal File</property>
-                  <property name="extension" type="string">aln</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10009" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .fa file association">
-                <serializedBean>
-                  <property name="description" type="string">Fasta File</property>
-                  <property name="extension" type="string">fa</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10010" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .fasta file association">
-                <serializedBean>
-                  <property name="description" type="string">Fasta File</property>
-                  <property name="extension" type="string">fasta</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10011" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .features file association">
-                <serializedBean>
-                  <property name="description" type="string">Jalview Features File</property>
-                  <property name="extension" type="string">features</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10012" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jvfeatures file association">
-                <serializedBean>
-                  <property name="description" type="string">Jalview Features File</property>
-                  <property name="extension" type="string">jvfeatures</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10013" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .gff2 file association">
-                <serializedBean>
-                  <property name="description" type="string">Generic Features Format v2 File</property>
-                  <property name="extension" type="string">gff2</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10014" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .gff3 file association">
-                <serializedBean>
-                  <property name="description" type="string">Generic Features Format v3 File</property>
-                  <property name="extension" type="string">gff3</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10015" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .concise file association">
-                <serializedBean>
-                  <property name="description" type="string">JnetFile File</property>
-                  <property name="extension" type="string">concise</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10016" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jnet file association">
-                <serializedBean>
-                  <property name="description" type="string">JnetFile File</property>
-                  <property name="extension" type="string">jnet</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10017" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .cif file association">
-                <serializedBean>
-                  <property name="description" type="string">mmCIF File</property>
-                  <property name="extension" type="string">cif</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10018" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .mcif file association">
-                <serializedBean>
-                  <property name="description" type="string">mmCIF File</property>
-                  <property name="extension" type="string">mcif</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10019" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .mmcif file association">
-                <serializedBean>
-                  <property name="description" type="string">mmCIF File</property>
-                  <property name="extension" type="string">mmcif</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10020" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .msf file association">
-                <serializedBean>
-                  <property name="description" type="string">MSF File</property>
-                  <property name="extension" type="string">msf</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10021" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pdb file association">
-                <serializedBean>
-                  <property name="description" type="string">PDB File</property>
-                  <property name="extension" type="string">pdb</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10022" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .ent file association">
-                <serializedBean>
-                  <property name="description" type="string">PDB File</property>
-                  <property name="extension" type="string">ent</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10023" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pfam file association">
-                <serializedBean>
-                  <property name="description" type="string">PFAM File</property>
-                  <property name="extension" type="string">pfam</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10024" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .phy file association">
-                <serializedBean>
-                  <property name="description" type="string">PHYLIP File</property>
-                  <property name="extension" type="string">phy</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10025" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pileup file association">
-                <serializedBean>
-                  <property name="description" type="string">PileUp File</property>
-                  <property name="extension" type="string">pileup</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10026" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pir file association">
-                <serializedBean>
-                  <property name="description" type="string">PIR File</property>
-                  <property name="extension" type="string">pir</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10027" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .rnaml file association">
-                <serializedBean>
-                  <property name="description" type="string">RNAML File</property>
-                  <property name="extension" type="string">rnaml</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10028" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .mat file association">
-                <serializedBean>
-                  <property name="description" type="string">Substitution Matrix File</property>
-                  <property name="extension" type="string">mat</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10029" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .sto file association">
-                <serializedBean>
-                  <property name="description" type="string">Stockholm File</property>
-                  <property name="extension" type="string">sto</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
-
-              <action id="10030" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .stk file association">
-                <serializedBean>
-                  <property name="description" type="string">Stockholm File</property>
-                  <property name="extension" type="string">stk</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>Jalview-File.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
-
-                
+                  <action id="10000" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">Jalview (.jvp)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10001" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="3" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10002" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jvp file association">
+                    <serializedBean>
+                      <property name="description" type="string">Jalview File</property>
+                      <property name="extension" type="string">jvp</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-jalview+xml+zip</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-jalview+xml+zip</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10003" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">Jalview Launch (.jvl)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10004" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="6" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10005" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jvl file association">
+                    <serializedBean>
+                      <property name="description" type="string">Jalview Launch File</property>
+                      <property name="extension" type="string">jvl</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-Launch.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-jalview-jvl+text</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-Launch.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-jalview-jvl+text</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-Launch.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10006" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">AMSA (.amsa)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10007" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="10" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10008" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .amsa file association">
+                    <serializedBean>
+                      <property name="description" type="string">AMSA File</property>
+                      <property name="extension" type="string">amsa</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-amsa+txt</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-amsa+txt</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10009" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">Jalview Annotations (.annotations)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10010" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="13" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10011" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .annotations file association">
+                    <serializedBean>
+                      <property name="description" type="string">Jalview Annotations File</property>
+                      <property name="extension" type="string">annotations</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-jalview-annotations+text</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-jalview-annotations+text</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10012" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">Jalview Annotations (.jvannotations)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10013" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="16" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10014" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jvannotations file association">
+                    <serializedBean>
+                      <property name="description" type="string">Jalview Annotations File</property>
+                      <property name="extension" type="string">jvannotations</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-jalview-annotations+text</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-jalview-annotations+text</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10015" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">BioJSON (.biojson)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10016" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="20" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10017" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .biojson file association">
+                    <serializedBean>
+                      <property name="description" type="string">BioJSON File</property>
+                      <property name="extension" type="string">biojson</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-jalview-biojson+json</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-jalview-biojson+json</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10018" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">BLC (.blc)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10019" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="23" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10020" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .blc file association">
+                    <serializedBean>
+                      <property name="description" type="string">BLC File</property>
+                      <property name="extension" type="string">blc</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-blc+txt</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-blc+txt</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10021" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">Clustal (.aln)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10022" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="26" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10023" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .aln file association">
+                    <serializedBean>
+                      <property name="description" type="string">Clustal File</property>
+                      <property name="extension" type="string">aln</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-clustal+txt</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-clustal+txt</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10024" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">Fasta (.fa)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10025" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="30" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10026" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .fa file association">
+                    <serializedBean>
+                      <property name="description" type="string">Fasta File</property>
+                      <property name="extension" type="string">fa</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-fasta+txt</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-fasta+txt</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10027" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">Fasta (.fasta)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10028" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="33" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10029" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .fasta file association">
+                    <serializedBean>
+                      <property name="description" type="string">Fasta File</property>
+                      <property name="extension" type="string">fasta</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-fasta+txt</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-fasta+txt</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10030" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">Jalview Features (.features)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10031" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="36" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10032" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .features file association">
+                    <serializedBean>
+                      <property name="description" type="string">Jalview Features File</property>
+                      <property name="extension" type="string">features</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-jalview-features+text</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-jalview-features+text</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10033" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">Jalview Features (.jvfeatures)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10034" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="40" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10035" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jvfeatures file association">
+                    <serializedBean>
+                      <property name="description" type="string">Jalview Features File</property>
+                      <property name="extension" type="string">jvfeatures</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-jalview-features+text</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-jalview-features+text</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10036" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">Generic Features Format v2 (.gff2)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10037" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="43" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10038" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .gff2 file association">
+                    <serializedBean>
+                      <property name="description" type="string">Generic Features Format v2 File</property>
+                      <property name="extension" type="string">gff2</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-gff2+txt</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-gff2+txt</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10039" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">Generic Features Format v3 (.gff3)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10040" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="46" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10041" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .gff3 file association">
+                    <serializedBean>
+                      <property name="description" type="string">Generic Features Format v3 File</property>
+                      <property name="extension" type="string">gff3</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-gff3+txt</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-gff3+txt</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10042" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">JnetFile (.concise)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10043" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="50" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10044" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .concise file association">
+                    <serializedBean>
+                      <property name="description" type="string">JnetFile File</property>
+                      <property name="extension" type="string">concise</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-jalview-jnet+text</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-jalview-jnet+text</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10045" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">JnetFile (.jnet)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10046" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="53" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10047" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jnet file association">
+                    <serializedBean>
+                      <property name="description" type="string">JnetFile File</property>
+                      <property name="extension" type="string">jnet</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-jalview-jnet+text</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-jalview-jnet+text</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10048" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">mmCIF (.cif)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10049" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="56" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10050" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .cif file association">
+                    <serializedBean>
+                      <property name="description" type="string">mmCIF File</property>
+                      <property name="extension" type="string">cif</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">chemical/x-cif</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">chemical/x-cif</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10051" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">mmCIF (.mcif)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10052" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="60" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10053" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .mcif file association">
+                    <serializedBean>
+                      <property name="description" type="string">mmCIF File</property>
+                      <property name="extension" type="string">mcif</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">chemical/x-mcif</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">chemical/x-mcif</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10054" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">mmCIF (.mmcif)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10055" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="63" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10056" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .mmcif file association">
+                    <serializedBean>
+                      <property name="description" type="string">mmCIF File</property>
+                      <property name="extension" type="string">mmcif</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">chemical/x-mcif</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">chemical/x-mcif</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10057" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">MSF (.msf)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10058" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="66" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10059" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .msf file association">
+                    <serializedBean>
+                      <property name="description" type="string">MSF File</property>
+                      <property name="extension" type="string">msf</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-msf+txt</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-msf+txt</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10060" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">PDB (.pdb)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10061" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="70" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10062" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pdb file association">
+                    <serializedBean>
+                      <property name="description" type="string">PDB File</property>
+                      <property name="extension" type="string">pdb</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">chemical/x-pdb</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">chemical/x-pdb</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10063" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">PDB (.ent)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10064" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="73" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10065" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .ent file association">
+                    <serializedBean>
+                      <property name="description" type="string">PDB File</property>
+                      <property name="extension" type="string">ent</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">chemical/x-pdb</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">chemical/x-pdb</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10066" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">PFAM (.pfam)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10067" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="76" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10068" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pfam file association">
+                    <serializedBean>
+                      <property name="description" type="string">PFAM File</property>
+                      <property name="extension" type="string">pfam</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-pfam+txt</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-pfam+txt</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10069" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">PHYLIP (.phy)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10070" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="80" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10071" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .phy file association">
+                    <serializedBean>
+                      <property name="description" type="string">PHYLIP File</property>
+                      <property name="extension" type="string">phy</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-phylip+txt</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-phylip+txt</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10072" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">PileUp (.pileup)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10073" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="83" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10074" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pileup file association">
+                    <serializedBean>
+                      <property name="description" type="string">PileUp File</property>
+                      <property name="extension" type="string">pileup</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-pileup+txt</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-pileup+txt</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10075" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">PIR (.pir)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10076" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="86" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10077" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pir file association">
+                    <serializedBean>
+                      <property name="description" type="string">PIR File</property>
+                      <property name="extension" type="string">pir</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-pir+txt</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-pir+txt</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10078" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">RNAML (.rnaml)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10079" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="90" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10080" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .rnaml file association">
+                    <serializedBean>
+                      <property name="description" type="string">RNAML File</property>
+                      <property name="extension" type="string">rnaml</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/rnaml+xml</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/rnaml+xml</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10081" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">Substitution Matrix (.mat)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10082" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="93" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10083" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .mat file association">
+                    <serializedBean>
+                      <property name="description" type="string">Substitution Matrix File</property>
+                      <property name="extension" type="string">mat</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-jalview-scorematrix+text</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-jalview-scorematrix+text</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10084" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">Stockholm (.sto)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10085" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="96" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10086" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .sto file association">
+                    <serializedBean>
+                      <property name="description" type="string">Stockholm File</property>
+                      <property name="extension" type="string">sto</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-stockholm+txt</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-stockholm+txt</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
+
+                  <action id="10087" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">Stockholm (.stk)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="10088" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="100" />
+                    </serializedBean>
+                  </action>
+
+                  <action id="10089" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .stk file association">
+                    <serializedBean>
+                      <property name="description" type="string">Stockholm File</property>
+                      <property name="extension" type="string">stk</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">application/x-stockholm+txt</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">application/x-stockholm+txt</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>Jalview-File.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
 

diff --git a/utils/install4j/file_associations_template-install4j8.xml b/utils/install4j/file_associations_template-install4j8.xml
index ce5ebae..ee3aec8 100644 (file)
--- a/utils/install4j/file_associations_template-install4j8.xml
+++ b/utils/install4j/file_associations_template-install4j8.xml
@@ -1,22 +1,42 @@
-              <action id="$$ID$$" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .$$EXTENSION$$ file association">
-                <serializedBean>
-                  <property name="description" type="string">$$NAME$$ File</property>
-                  <property name="extension" type="string">$$EXTENSION$$</property>
-                  <property name="launcherId" type="string">737</property>
-                  <property name="macIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>$$ICONFILE$$.icns</string>
-                    </object>
-                  </property>
-                  <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                  <property name="unix" type="boolean" value="true" />
-                  <property name="windowsIconFile">
-                    <object class="com.install4j.api.beans.ExternalFile">
-                      <string>$$ICONFILE$$.ico</string>
-                    </object>
-                  </property>
-                </serializedBean>
-              </action>
+                  <action id="$$ID$$" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="detailMessage" type="string">$$NAME$$ (.$$EXTENSION$$)</property>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="$$ID1$$" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="percentValue" type="int" value="$$PROGRESSPERCENT$$" />
+                    </serializedBean>
+                  </action>
 
-                
+                  <action id="$$ID2$$" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .$$EXTENSION$$ file association">
+                    <serializedBean>
+                      <property name="description" type="string">$$NAME$$ File</property>
+                      <property name="extension" type="string">$$EXTENSION$$</property>
+                      <property name="launcherId" type="string">737</property>
+                      <property name="macIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>$$ICONFILE$$.icns</string>
+                        </object>
+                      </property>
+                      <!--<property name="macMimeType" type="string">$$MIMETYPE$$</property>-->
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="restartFinder" type="boolean" value="true" />
+                      <property name="unix" type="boolean" value="true" />
+                      <property name="unixIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>$$ICONFILE$$.png</string>
+                        </object>
+                      </property>
+                      <property name="unixMimeType" type="string">$$MIMETYPE$$</property>
+                      <property name="windowsIconFile">
+                        <object class="com.install4j.api.beans.ExternalFile">
+                          <string>$$ICONFILE$$.ico</string>
+                        </object>
+                      </property>
+                    </serializedBean>
+                  </action>
 

diff --git a/utils/install4j/install4j8_template.install4j b/utils/install4j/install4j8_template.install4j
index e595d04..1d7c17f 100644 (file)
--- a/utils/install4j/install4j8_template.install4j
+++ b/utils/install4j/install4j8_template.install4j
@@ -363,6 +363,7 @@ return console.askOkCancel(message, true);
               <formComponent id="1694" beanClass="com.install4j.runtime.beans.formcomponents.FileAssociationsComponent" useExternalParametrization="true" externalParametrizationName="File Associations" externalParametrizationMode="include">
                 <serializedBean>
                   <property name="fillVertical" type="boolean" value="true" />
+                  <property name="selectionButtonPosition" type="enum" class="com.install4j.runtime.beans.formcomponents.VerticalDockingPosition" value="TOP" />
                   <property name="showSelectionButtons" type="boolean" value="true" />
                 </serializedBean>
                 <externalParametrizationPropertyNames>
@@ -403,6 +404,28 @@ return console.askOkCancel(message, true);
                   <property name="vmOptions" type="array" elementType="string" length="0" />
                 </serializedBean>
               </action>
+              <group id="2251" beanClass="com.install4j.runtime.beans.groups.ActionGroup">
+                <beans>
+                  <action id="2253" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="statusMessage" type="string">Creating file associations...</property>
+                      <property name="useDetail" type="boolean" value="true" />
+                      <property name="useStatus" type="boolean" value="true" />
+                    </serializedBean>
+                  </action>
+                  <action id="2254" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="progressChangeType" type="enum" class="com.install4j.runtime.beans.actions.control.ProgressChangeType" value="SET_INDETERMINATE" />
+                    </serializedBean>
+                  </action>
+                  <action name="EXTENSIONS_REPLACED_BY_GRADLE" id="1691" customizedId="EXTENSIONS" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0">
+                    <serializedBean>
+                      <property name="description" type="string">This action, identified by its name "EXTENSIONS_REPLACED_BY_GRADLE", will be replaced by gradle with the contents of file 'file_associations_auto_install4j.xml'.</property>
+                      <property name="extension" type="string">extensions_to_be_replaced_by_gradle</property>
+                    </serializedBean>
+                  </action>
+                </beans>
+              </group>
             </actions>
             <formComponents>
               <formComponent id="16" beanClass="com.install4j.runtime.beans.formcomponents.ProgressComponent">
@@ -469,12 +492,6 @@ return console.askOkCancel(message, true);
                 </serializedBean>
                 <condition>context.getBooleanVariable("addToDockAction")</condition>
               </action>
-              <action name="EXTENSIONS_REPLACED_BY_GRADLE" id="1691" customizedId="EXTENSIONS" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0">
-                <serializedBean>
-                  <property name="description" type="string">This action, identified by its name "EXTENSIONS_REPLACED_BY_GRADLE", will be replaced by gradle with the contents of file 'file_associations_auto_install4j.xml'.</property>
-                  <property name="extension" type="string">extensions_to_be_replaced_by_gradle</property>
-                </serializedBean>
-              </action>
             </actions>
             <formComponents>
               <formComponent id="21" beanClass="com.install4j.runtime.beans.formcomponents.MultilineLabelComponent" insetBottom="10">
@@ -1095,7 +1112,7 @@ return console.askYesNo(message, true);
         <file name=".DS_Store" file="./DS_Store" />
         <symlink name="Jalview.app/Contents/Resources/app/${compiler:JRE_DIR}/Contents/MacOS/libjli.dylib" target="../Home/lib/jli/libjli.dylib" />
         <file name="Jalview.app/Contents/Resources/Jalview-File.icns" file="./Jalview-File.icns" />
-        <file name="Jalview.app/Contents/Resources/Jalview-Version-Locator.icns" file="Jalview-Version-Locator.icns" />
+        <file name="Jalview.app/Contents/Resources/Jalview-Launch.icns" file="Jalview-Launch.icns" />
         <symlink name="Uninstall Old Jalview (optional).app" target="Jalview.app/Contents/Resources/app/Uninstall Old Jalview.app" />
       </topLevelFiles>
     </macosArchive>
@@ -1115,7 +1132,7 @@ return console.askYesNo(message, true);
         <file name=".background/jalview_dmg_background.png" file="./jalview_dmg_background.png" />
         <file name=".DS_Store" file="./DS_Store" />
         <symlink name="Jalview.app/Contents/Resources/app/${compiler:JRE_DIR}/Contents/MacOS/libjli.dylib" target="../Home/lib/jli/libjli.dylib" />
-        <file name="Jalview.app/Contents/Resources/Jalview-Version-Locator.icns" file="Jalview-Version-Locator.icns" />
+        <file name="Jalview.app/Contents/Resources/Jalview-Launch.icns" file="Jalview-Launch.icns" />
         <file name="Jalview.app/Contents/Resources/Jalview-File.icns" file="Jalview-File.icns" />
         <symlink name="Uninstall Old Jalview (optional).app" target="Jalview.app/Contents/Resources/app/Uninstall Old Jalview.app" />
       </topLevelFiles>