jalview.biojava

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 5036a0b..155e7ee 100755 (executable)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -35,7 +35,7 @@ import jalview.jbgui.*;
 import jalview.schemes.*;\r
 import jalview.ws.*;\r
 import java.awt.dnd.*;\r
-import org.biojava.dasobert.eventmodel.*;\r
+import jalview.biojava.dasobert.eventmodel.*;\r
 \r
 /**\r
  * DOCUMENT ME!\r

diff --git a/src/jalview/gui/DasSourceBrowser.java b/src/jalview/gui/DasSourceBrowser.java
index 7875d7b..bdb3b57 100755 (executable)
--- a/src/jalview/gui/DasSourceBrowser.java
+++ b/src/jalview/gui/DasSourceBrowser.java
@@ -27,9 +27,9 @@ import javax.swing.*;
 import java.util.*;\r
 \r
 \r
-import org.biojava.dasobert.dasregistry.DasCoordinateSystem;\r
-import org.biojava.dasobert.dasregistry.DasSource;\r
-import org.biojava.dasobert.dasregistry.Das1Source;\r
+import jalview.biojava.dasobert.dasregistry.DasCoordinateSystem;\r
+import jalview.biojava.dasobert.dasregistry.DasSource;\r
+import jalview.biojava.dasobert.dasregistry.Das1Source;\r
 import java.awt.BorderLayout;\r
 \r
 public class DasSourceBrowser extends GDasSourceBrowser\r

diff --git a/src/jalview/gui/FeatureSettings.java b/src/jalview/gui/FeatureSettings.java
index ad9ad1d..ce88b90 100755 (executable)
--- a/src/jalview/gui/FeatureSettings.java
+++ b/src/jalview/gui/FeatureSettings.java
@@ -31,8 +31,8 @@ import jalview.io.JalviewFileChooser;
 import java.awt.BorderLayout;\r
 import java.awt.Font;\r
 import java.awt.Color;\r
-import org.biojava.dasobert.dasregistry.DasSource;\r
-import org.biojava.dasobert.dasregistry.DasCoordinateSystem;\r
+import jalview.biojava.dasobert.dasregistry.DasSource;\r
+import jalview.biojava.dasobert.dasregistry.DasCoordinateSystem;\r
 \r
 public class FeatureSettings extends JPanel\r
 {\r

diff --git a/src/jalview/io/DasSequenceFeatureFetcher.java b/src/jalview/io/DasSequenceFeatureFetcher.java
index f8bd7e0..3ccbbc5 100755 (executable)
--- a/src/jalview/io/DasSequenceFeatureFetcher.java
+++ b/src/jalview/io/DasSequenceFeatureFetcher.java
@@ -26,21 +26,20 @@ import java.util.*;
 \r
 import java.net.URL;\r
 \r
-import org.biojava.dasobert.das.FeatureThread;\r
-import org.biojava.dasobert.dasregistry.Das1Source;\r
-import org.biojava.dasobert.eventmodel.FeatureEvent;\r
-import org.biojava.dasobert.eventmodel.FeatureListener;\r
-import org.biojava.dasobert.dasregistry.DasSource;\r
+import jalview.biojava.dasobert.das.FeatureThread;\r
+import jalview.biojava.dasobert.eventmodel.FeatureEvent;\r
+import jalview.biojava.dasobert.eventmodel.FeatureListener;\r
+import jalview.biojava.dasobert.dasregistry.DasSource;\r
 \r
-import org.biojava.dasobert.das2.io.DasSourceReaderImpl;\r
-import org.biojava.dasobert.dasregistry.Das1Source;\r
-import org.biojava.dasobert.dasregistry.DasSource;\r
-import org.biojava.dasobert.das2.Das2Source;\r
-import org.biojava.dasobert.das2.DasSourceConverter;\r
+import jalview.biojava.dasobert.das2.io.DasSourceReaderImpl;\r
+import jalview.biojava.dasobert.dasregistry.Das1Source;\r
+import jalview.biojava.dasobert.dasregistry.DasSource;\r
+import jalview.biojava.dasobert.das2.Das2Source;\r
+import jalview.biojava.dasobert.das2.DasSourceConverter;\r
 \r
 \r
 import jalview.bin.Cache;\r
-import org.biojava.dasobert.dasregistry.DasCoordinateSystem;\r
+import jalview.biojava.dasobert.dasregistry.DasCoordinateSystem;\r
 \r
 import javax.swing.*;\r
 \r
@@ -373,7 +372,7 @@ public class DasSequenceFeatureFetcher implements Runnable
               {\r
 \r
                 // Will have to pass any mapping information to the fetcher - the start/end for the DBRefEntry may not be the same as the sequence's start/end\r
-                org.biojava.dasobert.dasregistry.DasCoordinateSystem cs[] = dasSource.getCoordinateSystem();\r
+                DasCoordinateSystem cs[] = dasSource.getCoordinateSystem();\r
                 for (int l=0; l<cs.length; l++)\r
                 {\r
                   if (jalview.util.DBRefUtils.isDasCoordinateSystem(cs[l].getName(), uprefs[j]))\r