ensure contents of hash is extended JAL-876

diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java
index 34ce3bf..e81c31a 100644 (file)
--- a/src/jalview/io/StockholmFile.java
+++ b/src/jalview/io/StockholmFile.java
@@ -447,7 +447,7 @@ public class StockholmFile extends AlignFile
               ns = "";\r
             }\r
             ns += seq;\r
-            content.put(description, seq);\r
+            content.put(description, ns);\r
           }\r
           else\r
           {\r