Set the start res and start seq

diff --git a/src/jalview/appletgui/AlignmentPanel.java b/src/jalview/appletgui/AlignmentPanel.java
index 13eb06f..8c93599 100755 (executable)
--- a/src/jalview/appletgui/AlignmentPanel.java
+++ b/src/jalview/appletgui/AlignmentPanel.java
@@ -347,6 +347,9 @@ public class AlignmentPanel extends Panel implements AdjustmentListener
     if(av.hasHiddenColumns)\r
      width = av.getColumnSelection().findColumnPosition(width);\r
 \r
+    av.setStartRes(x);\r
+    av.setStartSeq(y);\r
+\r
     av.setEndRes( (x + (seqPanel.seqCanvas.getSize().width / av.charWidth)) -1);\r
 \r
     hextent = seqPanel.seqCanvas.getSize().width / av.charWidth;\r