Compact Idiosyncratic Gapped Alignment Representation objects for internal rep of...

diff --git a/dist/Jalview.jnlp b/dist/Jalview.jnlp
new file mode 100644 (file)
index 0000000..2a4f666
--- /dev/null
+++ b/dist/Jalview.jnlp
@@ -0,0 +1,35 @@
+<?xml version="1.0" encoding="UTF-8"?>\r
+<jnlp spec="1.0+" codebase="http://www.jalview.org/webstart" href="Jalview.jnlp">\r
+       <information>\r
+               <title>Jalview</title>\r
+               <vendor>The Barton Group</vendor>\r
+               <homepage href="www.jalview.org"/>\r
+               <description>Jalview Multiple Alignment Editor</description>\r
+               <description kind="short">Jalview</description>\r
+               <icon href="logo_big.gif"/>\r
+       </information>\r
+       <security>\r
+               <all-permissions/>\r
+       </security>\r
+       <resources>\r
+               <j2se version="1.3+"/>\r
+               <jar href="jalview.jar"/>\r
+               <jar href="activation.jar"/>\r
+               <jar href="axis.jar"/>\r
+               <jar href="castor-0.9.6-xml.jar"/>\r
+               <jar href="commons-discovery.jar"/>\r
+               <jar href="commons-logging.jar"/>\r
+               <jar href="jalres.jar"/>\r
+               <jar href="jaxrpc.jar"/>\r
+               <jar href="jhall.jar"/>\r
+               <jar href="log4j-1.2.8.jar"/>\r
+               <jar href="mail.jar"/>\r
+               <jar href="regex.jar"/>\r
+               <jar href="saaj.jar"/>\r
+               <jar href="servlet.jar"/>\r
+               <jar href="wsdl4j.jar"/>\r
+               <jar href="xercesImpl.jar"/>\r
+               <jar href="xml-apis.jar"/>\r
+       </resources>\r
+       <application-desc main-class="jalview.bin.Jalview"/>\r
+</jnlp>\r

diff --git a/dist/Jalview.jnlp~ b/dist/Jalview.jnlp~
new file mode 100644 (file)
index 0000000..2a4f666
--- /dev/null
+++ b/dist/Jalview.jnlp~
@@ -0,0 +1,35 @@
+<?xml version="1.0" encoding="UTF-8"?>\r
+<jnlp spec="1.0+" codebase="http://www.jalview.org/webstart" href="Jalview.jnlp">\r
+       <information>\r
+               <title>Jalview</title>\r
+               <vendor>The Barton Group</vendor>\r
+               <homepage href="www.jalview.org"/>\r
+               <description>Jalview Multiple Alignment Editor</description>\r
+               <description kind="short">Jalview</description>\r
+               <icon href="logo_big.gif"/>\r
+       </information>\r
+       <security>\r
+               <all-permissions/>\r
+       </security>\r
+       <resources>\r
+               <j2se version="1.3+"/>\r
+               <jar href="jalview.jar"/>\r
+               <jar href="activation.jar"/>\r
+               <jar href="axis.jar"/>\r
+               <jar href="castor-0.9.6-xml.jar"/>\r
+               <jar href="commons-discovery.jar"/>\r
+               <jar href="commons-logging.jar"/>\r
+               <jar href="jalres.jar"/>\r
+               <jar href="jaxrpc.jar"/>\r
+               <jar href="jhall.jar"/>\r
+               <jar href="log4j-1.2.8.jar"/>\r
+               <jar href="mail.jar"/>\r
+               <jar href="regex.jar"/>\r
+               <jar href="saaj.jar"/>\r
+               <jar href="servlet.jar"/>\r
+               <jar href="wsdl4j.jar"/>\r
+               <jar href="xercesImpl.jar"/>\r
+               <jar href="xml-apis.jar"/>\r
+       </resources>\r
+       <application-desc main-class="jalview.bin.Jalview"/>\r
+</jnlp>\r

diff --git a/dist/XmlSchema-SNAPSHOT.jar b/dist/XmlSchema-SNAPSHOT.jar
new file mode 100644 (file)
index 0000000..8724ef2
Binary files /dev/null and b/dist/XmlSchema-SNAPSHOT.jar differ

diff --git a/dist/activation.jar b/dist/activation.jar
new file mode 100644 (file)
index 0000000..e0540d4
Binary files /dev/null and b/dist/activation.jar differ

diff --git a/dist/annogen-0.1.0.jar b/dist/annogen-0.1.0.jar
new file mode 100644 (file)
index 0000000..41413da
Binary files /dev/null and b/dist/annogen-0.1.0.jar differ

diff --git a/dist/axiom-api-1.0-RC2.jar b/dist/axiom-api-1.0-RC2.jar
new file mode 100644 (file)
index 0000000..fb1a04f
Binary files /dev/null and b/dist/axiom-api-1.0-RC2.jar differ

diff --git a/dist/axiom-dom-1.0-RC2.jar b/dist/axiom-dom-1.0-RC2.jar
new file mode 100644 (file)
index 0000000..7a9207b
Binary files /dev/null and b/dist/axiom-dom-1.0-RC2.jar differ

diff --git a/dist/axiom-impl-1.0-RC2.jar b/dist/axiom-impl-1.0-RC2.jar
new file mode 100644 (file)
index 0000000..7e30709
Binary files /dev/null and b/dist/axiom-impl-1.0-RC2.jar differ

diff --git a/dist/axis-wsdl4j-1.2.jar b/dist/axis-wsdl4j-1.2.jar
new file mode 100644 (file)
index 0000000..a9c8338
Binary files /dev/null and b/dist/axis-wsdl4j-1.2.jar differ

diff --git a/dist/axis.jar b/dist/axis.jar
new file mode 100644 (file)
index 0000000..8ebed9b
Binary files /dev/null and b/dist/axis.jar differ

diff --git a/dist/axis2-adb-1.0-RC2.jar b/dist/axis2-adb-1.0-RC2.jar
new file mode 100644 (file)
index 0000000..3c3ff24
Binary files /dev/null and b/dist/axis2-adb-1.0-RC2.jar differ

diff --git a/dist/axis2-kernel-1.0-RC2.jar b/dist/axis2-kernel-1.0-RC2.jar
new file mode 100644 (file)
index 0000000..eb6be03
Binary files /dev/null and b/dist/axis2-kernel-1.0-RC2.jar differ

diff --git a/dist/backport-util-concurrent-2.0_01_pd.jar b/dist/backport-util-concurrent-2.0_01_pd.jar
new file mode 100644 (file)
index 0000000..0ab8a71
Binary files /dev/null and b/dist/backport-util-concurrent-2.0_01_pd.jar differ

diff --git a/dist/backport-util-concurrent-2.1.jar b/dist/backport-util-concurrent-2.1.jar
new file mode 100644 (file)
index 0000000..b9868d8
Binary files /dev/null and b/dist/backport-util-concurrent-2.1.jar differ

diff --git a/dist/castor-0.9.6-xml.jar b/dist/castor-0.9.6-xml.jar
new file mode 100644 (file)
index 0000000..68fcf58
Binary files /dev/null and b/dist/castor-0.9.6-xml.jar differ

diff --git a/dist/commons-codec-1.2.jar b/dist/commons-codec-1.2.jar
new file mode 100644 (file)
index 0000000..212b9a0
Binary files /dev/null and b/dist/commons-codec-1.2.jar differ

diff --git a/dist/commons-codec-1.3.jar b/dist/commons-codec-1.3.jar
new file mode 100644 (file)
index 0000000..9009ed4
Binary files /dev/null and b/dist/commons-codec-1.3.jar differ

diff --git a/dist/commons-discovery.jar b/dist/commons-discovery.jar
new file mode 100644 (file)
index 0000000..31829ed
Binary files /dev/null and b/dist/commons-discovery.jar differ

diff --git a/dist/commons-fileupload-1.0.jar b/dist/commons-fileupload-1.0.jar
new file mode 100644 (file)
index 0000000..c2a1dc6
Binary files /dev/null and b/dist/commons-fileupload-1.0.jar differ

diff --git a/dist/commons-httpclient-3.0.jar b/dist/commons-httpclient-3.0.jar
new file mode 100644 (file)
index 0000000..bbe4f20
Binary files /dev/null and b/dist/commons-httpclient-3.0.jar differ

diff --git a/dist/commons-logging-1.0.4.jar b/dist/commons-logging-1.0.4.jar
new file mode 100644 (file)
index 0000000..8aeb63e
Binary files /dev/null and b/dist/commons-logging-1.0.4.jar differ

diff --git a/dist/commons-logging.jar b/dist/commons-logging.jar
new file mode 100644 (file)
index 0000000..0cec221
Binary files /dev/null and b/dist/commons-logging.jar differ

diff --git a/dist/dasobert.jar b/dist/dasobert.jar
new file mode 100644 (file)
index 0000000..a1c2173
Binary files /dev/null and b/dist/dasobert.jar differ