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(merge:
a737e31
61ba3fb
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Merge branch 'features/JAL-2465_No-mapping_Jmol-structures-loaded-via-url' into develop
author
Jim Procter
<jprocter@issues.jalview.org>
Mon, 29 May 2017 13:19:41 +0000
(14:19 +0100)
committer
Jim Procter
<jprocter@issues.jalview.org>
Mon, 29 May 2017 13:19:41 +0000
(14:19 +0100)
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src/jalview/ext/jmol/JalviewJmolBinding.java
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src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
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src/jalview/gui/ChimeraViewFrame.java
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src/jalview/gui/StructureViewerBase.java
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src/jalview/io/FileLoader.java
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src/jalview/structure/StructureSelectionManager.java
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src/jalview/structures/models/AAStructureBindingModel.java
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test/jalview/structures/models/AAStructureBindingModelTest.java
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diff --cc
src/jalview/ext/jmol/JalviewJmolBinding.java
Simple merge
diff --cc
src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
index
870c4fe
,
daf6131
..
b954677
---
1
/
src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
---
2
/
src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
+++ b/
src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
@@@
-337,10
-337,10
+337,10
@@@
public abstract class JalviewChimeraBin
*/
@Override
public String superposeStructures(AlignmentI[] _alignment,
- int[] _refStructure, ColumnSelection[] _hiddenCols)
+ int[] _refStructure, HiddenColumns[] _hiddenCols)
{
StringBuilder allComs = new StringBuilder(128);
- String[] files = getPdbFile();
+ String[] files = getStructureFiles();
if (!waitForFileLoad(files))
{
diff --cc
src/jalview/gui/ChimeraViewFrame.java
Simple merge
diff --cc
src/jalview/gui/StructureViewerBase.java
Simple merge
diff --cc
src/jalview/io/FileLoader.java
Simple merge
diff --cc
src/jalview/structure/StructureSelectionManager.java
Simple merge
diff --cc
src/jalview/structures/models/AAStructureBindingModel.java
Simple merge
diff --cc
test/jalview/structures/models/AAStructureBindingModelTest.java
Simple merge