javadoc

diff --git a/src/jalview/structure/StructureSelectionManager.java b/src/jalview/structure/StructureSelectionManager.java
index d36d009..d33c380 100644 (file)
--- a/src/jalview/structure/StructureSelectionManager.java
+++ b/src/jalview/structure/StructureSelectionManager.java
@@ -290,9 +290,12 @@ public class StructureSelectionManager
   }
 
   Vector seqmappings = null; // should be a simpler list of mapped seuqence
-
-  // pairs
-
+  /**
+   * highlight regions associated with a position (indexpos) in seq
+   * @param seq the sequeence that the mouse over occured on
+   * @param indexpos the absolute position being mouseovered in seq (0 to seq.length())
+   * @param index the sequence position (if -1, seq.findPosition is called to resolve the residue number)
+   */
   public void mouseOverSequence(SequenceI seq, int indexpos, int index)
   {
     boolean hasSequenceListeners = handlingVamsasMo || seqmappings != null;