\r
import javax.swing.*;\r
\r
+import java.util.*;\r
+\r
+import jalview.bin.Cache;\r
+\r
\r
/**\r
* DOCUMENT ME!\r
*/\r
public class Preferences extends GPreferences\r
{\r
- static boolean preferencesLoaded = false;\r
-\r
- /** DOCUMENT ME!! */\r
- public static boolean showFullscreen = false;\r
-\r
- /** DOCUMENT ME!! */\r
- public static boolean showFullId = true;\r
-\r
- /** DOCUMENT ME!! */\r
- public static boolean showAnnotation = true;\r
-\r
- /** DOCUMENT ME!! */\r
- public static boolean showConservation = true;\r
-\r
- /** DOCUMENT ME!! */\r
- public static boolean showQuality = true;\r
-\r
- /** DOCUMENT ME!! */\r
- public static boolean showIdentity = true;\r
+ /** Holds name and link separated with | character. Sequence ID must be $SEQUENCE_ID$ */\r
+ public static Vector sequenceURLLinks = new Vector();\r
+ Vector nameLinks, urlLinks;\r
\r
- /** DOCUMENT ME!! */\r
- public static String fontName = "SansSerif";\r
-\r
- /** DOCUMENT ME!! */\r
- public static String fontSize = "10";\r
-\r
- /** DOCUMENT ME!! */\r
- public static String fontStyle = Font.PLAIN + "";\r
-\r
- /** DOCUMENT ME!! */\r
- public static char gapSymbol = '-';\r
-\r
- /** DOCUMENT ME!! */\r
- public static String defaultColour = null;\r
-\r
- /** DOCUMENT ME!! */\r
- public static boolean showStartupFile = true;\r
-\r
- /** DOCUMENT ME!! */\r
- public static String startupFile = "http://www.jalview.org/examples/exampleFile.jar";\r
JInternalFrame frame;\r
\r
+\r
/**\r
* Creates a new Preferences object.\r
*/\r
public Preferences()\r
{\r
- initPreferences();\r
\r
frame = new JInternalFrame();\r
frame.setContentPane(this);\r
Desktop.addInternalFrame(frame, "Preferences", 480, 390);\r
+ frame.setMinimumSize(new Dimension(480,390));\r
\r
- fullID.setSelected(showFullId);\r
+ fullID.setSelected( Cache.getDefault("SHOW_FULL_ID", true));\r
+ fullScreen.setSelected( Cache.getDefault("SHOW_FULLSCREEN", false));\r
+ annotations.setSelected( Cache.getDefault("SHOW_FULL_ID", true));\r
+ conservation.setEnabled( Cache.getDefault("SHOW_ANNOTATIONS", true));\r
\r
- String string = Cache.getProperty("SHOW_FULLSCREEN");\r
- boolean value = false;\r
+ quality.setEnabled(Cache.getDefault("SHOW_ANNOTATIONS", true));\r
+ identity.setEnabled(Cache.getDefault("SHOW_ANNOTATIONS", true));\r
\r
- if (string != null)\r
- {\r
- value = Boolean.valueOf(string).booleanValue();\r
- }\r
-\r
- fullScreen.setSelected(value);\r
- annotations.setSelected(showAnnotation);\r
-\r
- conservation.setEnabled(showAnnotation);\r
- quality.setEnabled(showAnnotation);\r
- identity.setEnabled(showAnnotation);\r
-\r
- conservation.setSelected(showConservation);\r
- quality.setSelected(showQuality);\r
- identity.setSelected(showIdentity);\r
+ conservation.setSelected(Cache.getDefault("SHOW_CONSERVATION", true));\r
+ quality.setSelected(Cache.getDefault("SHOW_QUALITY", true));\r
+ identity.setSelected(Cache.getDefault("SHOW_IDENTITY", true));\r
\r
for (int i = 0; i < 12; i++)\r
{\r
colour.addItem(ColourSchemeProperty.getColourName(i));\r
}\r
\r
- string = Cache.getProperty("DEFAULT_COLOUR");\r
+ String string = Cache.getProperty("DEFAULT_COLOUR");\r
\r
if (string != null)\r
{\r
fontStyleCB.addItem("bold");\r
fontStyleCB.addItem("italic");\r
\r
- fontNameCB.setSelectedItem(fontName);\r
- fontSizeCB.setSelectedItem(fontSize);\r
- fontStyleCB.setSelectedItem(fontStyle);\r
+ fontNameCB.setSelectedItem(Cache.getDefault("FONT_NAME", "SansSerif"));\r
+ fontSizeCB.setSelectedItem(Cache.getDefault("FONT_SIZE", "10"));\r
+ fontStyleCB.setSelectedItem(Cache.getDefault("FONT_STYLE", Font.PLAIN + "") );\r
\r
gapSymbolCB.addItem("-");\r
gapSymbolCB.addItem(".");\r
\r
- gapSymbolCB.setSelectedItem(gapSymbol + "");\r
+ gapSymbolCB.setSelectedItem( Cache.getDefault("GAP_SYMBOL", "-"));\r
\r
- startupCheckbox.setSelected(showStartupFile);\r
- startupFileTextfield.setText(startupFile);\r
- }\r
+ startupCheckbox.setSelected( Cache.getDefault("SHOW_STARTUP_FILE", true) );\r
+ startupFileTextfield.setText(Cache.getDefault("STARTUP_FILE",\r
+ "http://www.jalview.org/examples/exampleFile.jar"));\r
\r
- /**\r
- * DOCUMENT ME!\r
- */\r
- public static void initPreferences()\r
- {\r
- String string = Cache.getProperty("SHOW_FULL_ID");\r
+ /****************************************************\r
+ * Set up Connections\r
+ */\r
\r
- if (string != null)\r
- {\r
- showFullId = Boolean.valueOf(string).booleanValue();\r
- }\r
+ string = Cache.getDefault("SEQUENCE_LINKS",\r
+ "SRS|http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz?-e+[uniprot-all:$SEQUENCE_ID$]+-vn+2");\r
+ sequenceURLLinks = new Vector();\r
\r
- string = Cache.getProperty("SHOW_FULLSCREEN");\r
+ try{\r
+ StringTokenizer st = new StringTokenizer(string, "|");\r
+ while (st.hasMoreElements())\r
+ {\r
+ sequenceURLLinks.addElement(st.nextToken() + "|" + st.nextToken());\r
+ }\r
+ }catch(Exception ex)\r
+ {System.out.println(ex+"\nError parsing sequence links");}\r
\r
- if (string != null)\r
- {\r
- showFullscreen = Boolean.valueOf(string).booleanValue();\r
- }\r
-\r
- string = Cache.getProperty("SHOW_ANNOTATIONS");\r
-\r
- if (string != null)\r
- {\r
- showAnnotation = Boolean.valueOf(string).booleanValue();\r
- }\r
-\r
- string = Cache.getProperty("SHOW_CONSERVATION");\r
-\r
- if (string != null)\r
- {\r
- showConservation = Boolean.valueOf(string).booleanValue();\r
- }\r
-\r
- string = Cache.getProperty("SHOW_QUALITY");\r
-\r
- if (string != null)\r
- {\r
- showQuality = Boolean.valueOf(string).booleanValue();\r
- }\r
-\r
- string = Cache.getProperty("SHOW_IDENTITY");\r
-\r
- if (string != null)\r
+ nameLinks = new Vector();\r
+ urlLinks = new Vector();\r
+ for(int i=0; i<sequenceURLLinks.size(); i++)\r
{\r
- showIdentity = Boolean.valueOf(string).booleanValue();\r
+ String link = sequenceURLLinks.elementAt(i).toString();\r
+ nameLinks.addElement(link.substring(0, link.indexOf("|")) );\r
+ urlLinks.addElement(link.substring(link.indexOf("|")+1));\r
}\r
\r
- string = Cache.getProperty("GAP_SYMBOL");\r
+ updateLinkData();\r
\r
- if (string != null)\r
- {\r
- gapSymbol = string.charAt(0);\r
- }\r
-\r
- string = Cache.getProperty("SHOW_FULL_ID");\r
+ useProxy.setSelected( Cache.getDefault("USE_PROXY", false));\r
+ proxyServerTB.setEnabled(useProxy.isSelected());\r
+ proxyPortTB.setEnabled(useProxy.isSelected());\r
+ proxyServerTB.setText( Cache.getDefault("PROXY_SERVER", ""));\r
+ proxyPortTB.setText(Cache.getDefault("PROXY_PORT", ""));\r
\r
- if (string != null)\r
- {\r
- showFullId = Boolean.valueOf(string).booleanValue();\r
- }\r
+ defaultBrowser.setText( Cache.getDefault("DEFAULT_BROWSER",""));\r
+ try\r
+ {\r
+ jbInit();\r
+ }\r
+ catch (Exception ex)\r
+ {\r
+ ex.printStackTrace();\r
+ }\r
\r
- string = Cache.getProperty("FONT_NAME");\r
+ }\r
\r
- if (string != null)\r
- {\r
- fontName = string;\r
- }\r
\r
- string = Cache.getProperty("FONT_STYLE");\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param e DOCUMENT ME!\r
+ */\r
+ public void ok_actionPerformed(ActionEvent e)\r
+ {\r
\r
- if (string != null)\r
- {\r
- fontStyle = string;\r
- }\r
+ Cache.applicationProperties.setProperty("SHOW_FULL_ID", Boolean.toString(fullID.isSelected()));\r
+ Cache.applicationProperties.setProperty("SHOW_FULLSCREEN", Boolean.toString(fullScreen.isSelected()));\r
\r
- string = Cache.getProperty("FONT_SIZE");\r
+ Cache.applicationProperties.setProperty("SHOW_ANNOTATIONS", Boolean.toString(annotations.isSelected()));\r
+ Cache.applicationProperties.setProperty("SHOW_CONSERVATION", Boolean.toString(conservation.isSelected()));\r
+ Cache.applicationProperties.setProperty("SHOW_QUALITY", Boolean.toString(quality.isSelected()));\r
+ Cache.applicationProperties.setProperty("SHOW_IDENTITY", Boolean.toString(identity.isSelected()));\r
\r
- if (string != null)\r
- {\r
- fontSize = string;\r
- }\r
+ Cache.applicationProperties.setProperty("DEFAULT_COLOUR", colour.getSelectedItem().toString());\r
+ Cache.applicationProperties.setProperty("GAP_SYMBOL", gapSymbolCB.getSelectedItem().toString());\r
\r
- string = Cache.getProperty("DEFAULT_COLOUR");\r
+ Cache.applicationProperties.setProperty("FONT_NAME", fontNameCB.getSelectedItem().toString());\r
+ Cache.applicationProperties.setProperty("FONT_STYLE", fontStyleCB.getSelectedItem().toString());\r
+ Cache.applicationProperties.setProperty("FONT_SIZE", fontSizeCB.getSelectedItem().toString());\r
\r
- if (string != null)\r
- {\r
- defaultColour = string;\r
- }\r
+ Cache.applicationProperties.setProperty("STARTUP_FILE", startupFileTextfield.getText());\r
+ Cache.applicationProperties.setProperty("SHOW_STARTUP_FILE", Boolean.toString(startupCheckbox.isSelected()));\r
\r
- string = Cache.getProperty("STARTUP_FILE");\r
+ Cache.applicationProperties.setProperty("DEFAULT_BROWSER", defaultBrowser.getText());\r
\r
- if (string != null)\r
+ if(nameLinks.size()>0)\r
{\r
- startupFile = string;\r
+ StringBuffer links = new StringBuffer();\r
+ sequenceURLLinks = new Vector();\r
+ for (int i = 0; i < nameLinks.size(); i++)\r
+ {\r
+ sequenceURLLinks.addElement(nameLinks.elementAt(i)+"|"+urlLinks.elementAt(i));\r
+ links.append(sequenceURLLinks.elementAt(i).toString());\r
+ links.append("|");\r
+ }\r
+ // remove last "|"\r
+ links.setLength( links.length()-1 );\r
+ Cache.applicationProperties.setProperty("SEQUENCE_LINKS", links.toString());\r
}\r
\r
- string = Cache.getProperty("SHOW_STARTUP_FILE");\r
+ Cache.applicationProperties.setProperty("USE_PROXY", Boolean.toString(useProxy.isSelected()));\r
+ Cache.applicationProperties.setProperty("PROXY_SERVER",proxyServerTB.getText());\r
+ Cache.applicationProperties.setProperty("PROXY_PORT", proxyPortTB.getText());\r
\r
- if (string != null)\r
+ if(useProxy.isSelected())\r
{\r
- showStartupFile = Boolean.valueOf(string).booleanValue();\r
+ System.setProperty("http.proxyHost", proxyServerTB.getText());\r
+ System.setProperty("http.proxyPort", proxyPortTB.getText());\r
}\r
\r
- preferencesLoaded = true;\r
- }\r
\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param e DOCUMENT ME!\r
- */\r
- public void ok_actionPerformed(ActionEvent e)\r
- {\r
- showFullId = fullID.isSelected();\r
- showFullscreen = fullScreen.isSelected();\r
- showAnnotation = annotations.isSelected();\r
- showConservation = conservation.isSelected();\r
- showQuality = quality.isSelected();\r
- showIdentity = identity.isSelected();\r
- defaultColour = colour.getSelectedItem().toString();\r
- gapSymbol = gapSymbolCB.getSelectedItem().toString().charAt(0);\r
- fontName = fontNameCB.getSelectedItem().toString();\r
- fontSize = fontSizeCB.getSelectedItem().toString();\r
- fontStyle = fontStyleCB.getSelectedItem().toString();\r
- startupFile = startupFileTextfield.getText();\r
- showStartupFile = startupCheckbox.isSelected();\r
-\r
- Cache.setProperty("SHOW_FULL_ID", Boolean.toString(showFullId));\r
- Cache.setProperty("SHOW_FULLSCREEN", Boolean.toString(showFullscreen));\r
-\r
- Cache.setProperty("SHOW_ANNOTATIONS", Boolean.toString(showAnnotation));\r
- Cache.setProperty("SHOW_CONSERVATION",\r
- Boolean.toString(showConservation));\r
- Cache.setProperty("SHOW_QUALITY", Boolean.toString(showQuality));\r
- Cache.setProperty("SHOW_IDENTITY", Boolean.toString(showIdentity));\r
-\r
- Cache.setProperty("DEFAULT_COLOUR", defaultColour);\r
- Cache.setProperty("GAP_SYMBOL", gapSymbol + "");\r
-\r
- Cache.setProperty("FONT_NAME", fontName);\r
- Cache.setProperty("FONT_STYLE", fontStyle);\r
- Cache.setProperty("FONT_SIZE", fontSize);\r
-\r
- Cache.setProperty("STARTUP_FILE", startupFile);\r
- Cache.setProperty("SHOW_STARTUP_FILE", Boolean.toString(showStartupFile));\r
\r
+ Cache.saveProperties();\r
try\r
{\r
frame.setClosed(true);\r
\r
if (value == JalviewFileChooser.APPROVE_OPTION)\r
{\r
- jalview.bin.Cache.setProperty("DEFAULT_FILE_FORMAT",\r
+ jalview.bin.Cache.applicationProperties.setProperty("DEFAULT_FILE_FORMAT",\r
chooser.getSelectedFormat());\r
startupFileTextfield.setText(chooser.getSelectedFile()\r
.getAbsolutePath());\r
quality.setEnabled(annotations.isSelected());\r
identity.setEnabled(annotations.isSelected());\r
}\r
+\r
+\r
+ public void newLink_actionPerformed(ActionEvent e) {\r
+\r
+ GSequenceLink link = new GSequenceLink();\r
+ boolean valid = false;\r
+ while( !valid )\r
+ {\r
+ if (JOptionPane.showInternalConfirmDialog(Desktop.desktop, link,\r
+ "New sequence URL link",\r
+ JOptionPane.OK_CANCEL_OPTION\r
+ ,-1, null)\r
+ == JOptionPane.OK_OPTION)\r
+ {\r
+ if (link.checkValid())\r
+ {\r
+ nameLinks.addElement(link.getName());\r
+ urlLinks.addElement(link.getURL());\r
+ updateLinkData();\r
+ valid = true;\r
+ }\r
+ }\r
+ else\r
+ break;\r
+ }\r
+ }\r
+\r
+ public void editLink_actionPerformed(ActionEvent e) {\r
+ GSequenceLink link = new GSequenceLink();\r
+\r
+ int index = linkNameList.getSelectedIndex();\r
+ if(index==-1)\r
+ {\r
+ JOptionPane.showInternalMessageDialog(Desktop.desktop, "No link selected!"\r
+ ,"No link selected", JOptionPane.WARNING_MESSAGE);\r
+ return;\r
+ }\r
+\r
+ link.setName( nameLinks.elementAt(index).toString() );\r
+ link.setURL( urlLinks.elementAt(index).toString() );\r
+\r
+ boolean valid = false;\r
+ while (!valid)\r
+ {\r
+\r
+ if (JOptionPane.showInternalConfirmDialog(Desktop.desktop, link,\r
+ "New sequence URL link",\r
+ JOptionPane.OK_CANCEL_OPTION\r
+ ,-1, null)\r
+ == JOptionPane.OK_OPTION)\r
+ {\r
+ if (link.checkValid())\r
+ {\r
+ nameLinks.setElementAt(link.getName(), index);\r
+ urlLinks.setElementAt(link.getURL(), index);\r
+ updateLinkData();\r
+ valid = true;\r
+ }\r
+ }\r
+\r
+ else\r
+ break;\r
+ }\r
+ }\r
+\r
+ public void deleteLink_actionPerformed(ActionEvent e) {\r
+ int index = linkNameList.getSelectedIndex();\r
+ if(index==-1)\r
+ {\r
+ JOptionPane.showInternalMessageDialog(Desktop.desktop, "No link selected!"\r
+ ,"No link selected", JOptionPane.WARNING_MESSAGE);\r
+ return;\r
+ }\r
+ nameLinks.removeElementAt(index);\r
+ urlLinks.removeElementAt(index);\r
+ updateLinkData();\r
+ }\r
+\r
+ void updateLinkData()\r
+ {\r
+ linkNameList.setListData(nameLinks);\r
+ linkURLList.setListData(urlLinks);\r
+ }\r
+\r
+ public void defaultBrowser_mouseClicked(MouseEvent e)\r
+ {\r
+ JFileChooser chooser = new JFileChooser(".");\r
+ chooser.setDialogTitle("Select default web browser");\r
+\r
+ int value = chooser.showOpenDialog(this);\r
+\r
+ if (value == JFileChooser.APPROVE_OPTION)\r
+ {\r
+ defaultBrowser.setText(chooser.getSelectedFile().getAbsolutePath());\r
+ }\r
+\r
+ }\r
+\r
+ private void jbInit()\r
+ throws Exception\r
+ {\r
+ }\r
}\r
package jalview.jbgui;\r
\r
import java.awt.*;\r
-import java.awt.event.ActionEvent;\r
-import java.awt.event.ActionListener;\r
-import java.awt.event.MouseAdapter;\r
-import java.awt.event.MouseEvent;\r
\r
import javax.swing.*;\r
import javax.swing.border.TitledBorder;\r
+import java.awt.event.*;\r
+import javax.swing.event.*;\r
\r
\r
/**\r
*/\r
public class GPreferences extends JPanel\r
{\r
- JTabbedPane visaulTab = new JTabbedPane();\r
- JPanel visual = new JPanel();\r
+ JTabbedPane tabbedPane = new JTabbedPane();\r
+\r
JButton ok = new JButton();\r
JButton cancel = new JButton();\r
- JPanel jPanel1 = new JPanel();\r
+ JPanel okCancelPanel = new JPanel();\r
BorderLayout borderLayout1 = new BorderLayout();\r
protected JCheckBox quality = new JCheckBox();\r
- JPanel jPanel2 = new JPanel();\r
- TitledBorder titledBorder1 = new TitledBorder("Open new alignment");\r
+ JPanel visualTab = new JPanel();\r
protected JCheckBox fullID = new JCheckBox();\r
protected JCheckBox fullScreen = new JCheckBox();\r
protected JCheckBox conservation = new JCheckBox();\r
protected JCheckBox identity = new JCheckBox();\r
protected JCheckBox annotations = new JCheckBox();\r
- JLabel jLabel1 = new JLabel();\r
+ JLabel gapLabel = new JLabel();\r
protected JComboBox colour = new JComboBox();\r
- JLabel jLabel2 = new JLabel();\r
- JLabel jLabel3 = new JLabel();\r
+ JLabel colourLabel = new JLabel();\r
+ JLabel fontLabel = new JLabel();\r
protected JComboBox fontSizeCB = new JComboBox();\r
protected JComboBox fontStyleCB = new JComboBox();\r
protected JComboBox fontNameCB = new JComboBox();\r
protected JComboBox gapSymbolCB = new JComboBox();\r
protected JCheckBox startupCheckbox = new JCheckBox();\r
protected JTextField startupFileTextfield = new JTextField();\r
-\r
- /**\r
+ JPanel connectTab = new JPanel();\r
+ JLabel serverLabel = new JLabel();\r
+ protected JList linkURLList = new JList();\r
+ protected JTextField proxyServerTB = new JTextField();\r
+ protected JTextField proxyPortTB = new JTextField();\r
+ JLabel portLabel = new JLabel();\r
+ JLabel browserLabel = new JLabel();\r
+ protected JTextField defaultBrowser = new JTextField();\r
+ JButton newLink = new JButton();\r
+ JButton editLink = new JButton();\r
+ JButton deleteLink = new JButton();\r
+ JScrollPane linkScrollPane = new JScrollPane();\r
+ JPanel linkPanel = new JPanel();\r
+ BorderLayout borderLayout2 = new BorderLayout();\r
+ JPanel editLinkButtons = new JPanel();\r
+ GridLayout gridLayout1 = new GridLayout();\r
+ protected JList linkNameList = new JList();\r
+ JPanel linkPanel2 = new JPanel();\r
+ BorderLayout borderLayout3 = new BorderLayout();\r
+ protected JCheckBox useProxy = new JCheckBox();\r
+ JPanel jPanel1 = new JPanel();\r
+ TitledBorder titledBorder1 = new TitledBorder("Proxy Server");\r
+ GridBagLayout gridBagLayout2 = new GridBagLayout();\r
+ GridBagLayout gridBagLayout1 = new GridBagLayout();\r
+ GridBagLayout gridBagLayout3 = new GridBagLayout();\r
+ /**\r
* Creates a new GPreferences object.\r
*/\r
public GPreferences()\r
cancel_actionPerformed(e);\r
}\r
});\r
- visual.setLayout(null);\r
quality.setEnabled(false);\r
quality.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
quality.setHorizontalAlignment(SwingConstants.RIGHT);\r
quality.setSelected(true);\r
quality.setText("Quality");\r
quality.setBounds(new Rectangle(248, 53, 81, 23));\r
- jPanel2.setBorder(titledBorder1);\r
- jPanel2.setBounds(new Rectangle(9, 20, 442, 241));\r
- jPanel2.setLayout(null);\r
+ visualTab.setBorder(new TitledBorder("Open new alignment"));\r
+ visualTab.setBounds(new Rectangle(9, 20, 442, 241));\r
+ visualTab.setLayout(null);\r
fullID.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
fullID.setHorizontalAlignment(SwingConstants.RIGHT);\r
fullID.setHorizontalTextPosition(SwingConstants.LEFT);\r
annotations_actionPerformed(e);\r
}\r
});\r
- jLabel1.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
- jLabel1.setHorizontalAlignment(SwingConstants.RIGHT);\r
- jLabel1.setText("Gap Symbol");\r
- jLabel1.setBounds(new Rectangle(41, 142, 76, 15));\r
+ gapLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+ gapLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ gapLabel.setText("Gap Symbol");\r
+ gapLabel.setBounds(new Rectangle(41, 142, 76, 15));\r
colour.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
colour.setBounds(new Rectangle(121, 168, 154, 21));\r
- jLabel2.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
- jLabel2.setHorizontalAlignment(SwingConstants.RIGHT);\r
- jLabel2.setText("Colour");\r
- jLabel2.setBounds(new Rectangle(60, 172, 58, 15));\r
- jLabel3.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
- jLabel3.setHorizontalAlignment(SwingConstants.RIGHT);\r
- jLabel3.setText("Font");\r
- jLabel3.setBounds(new Rectangle(83, 114, 34, 15));\r
+ colourLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+ colourLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ colourLabel.setText("Colour");\r
+ colourLabel.setBounds(new Rectangle(60, 172, 58, 15));\r
+ fontLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+ fontLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ fontLabel.setText("Font");\r
+ fontLabel.setBounds(new Rectangle(83, 114, 34, 15));\r
fontSizeCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
fontSizeCB.setBounds(new Rectangle(304, 109, 49, 21));\r
fontStyleCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
gapSymbolCB.setBounds(new Rectangle(121, 140, 67, 21));\r
startupCheckbox.setText("Open file");\r
startupCheckbox.setBounds(new Rectangle(4, 200, 115, 23));\r
- startupCheckbox.addActionListener(new ActionListener()\r
- {\r
- public void actionPerformed(ActionEvent e)\r
- {\r
- jCheckBox1_actionPerformed(e);\r
- }\r
- });\r
startupCheckbox.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
startupCheckbox.setHorizontalAlignment(SwingConstants.RIGHT);\r
startupCheckbox.setHorizontalTextPosition(SwingConstants.LEFT);\r
}\r
});\r
\r
- jPanel2.add(annotations);\r
- jPanel2.add(conservation);\r
- jPanel2.add(quality);\r
- jPanel2.add(fullID);\r
- jPanel2.add(gapSymbolCB);\r
- jPanel2.add(jLabel1);\r
- jPanel2.add(fontNameCB);\r
- jPanel2.add(jLabel2);\r
- jPanel2.add(jLabel3);\r
- jPanel2.add(colour);\r
- jPanel2.add(fontSizeCB);\r
- jPanel2.add(fontStyleCB);\r
- jPanel2.add(identity);\r
- jPanel2.add(fullScreen);\r
- jPanel2.add(startupCheckbox);\r
- jPanel2.add(startupFileTextfield);\r
- jPanel1.add(ok);\r
- jPanel1.add(cancel);\r
- this.add(visaulTab, java.awt.BorderLayout.CENTER);\r
- visaulTab.add(visual, "visual");\r
- visual.add(jPanel2);\r
- this.add(jPanel1, java.awt.BorderLayout.SOUTH);\r
+ connectTab.setLayout(gridBagLayout3);\r
+ serverLabel.setText("Address");\r
+ serverLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ serverLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+ proxyServerTB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+ proxyPortTB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+ portLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+ portLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ portLabel.setText("Port");\r
+ browserLabel.setFont(new java.awt.Font("SansSerif", 0, 11));\r
+ browserLabel.setHorizontalAlignment(SwingConstants.TRAILING);\r
+ browserLabel.setText("Default Browser (Unix)");\r
+ defaultBrowser.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+ defaultBrowser.setText("");\r
+ newLink.setText("New");\r
+ newLink.addActionListener(new java.awt.event.ActionListener() {\r
+ public void actionPerformed(ActionEvent e) {\r
+ newLink_actionPerformed(e);\r
+ }\r
+ });\r
+ editLink.setText("Edit");\r
+ editLink.addActionListener(new java.awt.event.ActionListener() {\r
+ public void actionPerformed(ActionEvent e) {\r
+ editLink_actionPerformed(e);\r
+ }\r
+ });\r
+ deleteLink.setText("Delete");\r
+ deleteLink.addActionListener(new java.awt.event.ActionListener() {\r
+ public void actionPerformed(ActionEvent e) {\r
+ deleteLink_actionPerformed(e);\r
+ }\r
+ });\r
+\r
+ linkURLList.addListSelectionListener(new ListSelectionListener()\r
+ {\r
+ public void valueChanged(ListSelectionEvent e)\r
+ {\r
+ int index = linkURLList.getSelectedIndex();\r
+ linkNameList.setSelectedIndex(index);\r
+ }\r
+ });\r
+\r
+ linkNameList.addListSelectionListener(new ListSelectionListener()\r
+ {\r
+ public void valueChanged(ListSelectionEvent e)\r
+ {\r
+ int index = linkNameList.getSelectedIndex();\r
+ linkURLList.setSelectedIndex(index);\r
+ }\r
+ });\r
+\r
+ linkScrollPane.setBorder(null);\r
+ linkPanel.setBorder(new TitledBorder("URL link from Sequence ID"));\r
+ linkPanel.setLayout(borderLayout2);\r
+ editLinkButtons.setLayout(gridLayout1);\r
+ gridLayout1.setRows(3);\r
+ linkNameList.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11));\r
+ linkNameList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);\r
+ linkPanel2.setLayout(borderLayout3);\r
+ linkURLList.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+ linkURLList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);\r
+\r
+ defaultBrowser.addMouseListener(new MouseAdapter()\r
+ {\r
+ public void mouseClicked(MouseEvent e)\r
+ {\r
+ if (e.getClickCount() > 1)\r
+ {\r
+ defaultBrowser_mouseClicked(e);\r
+ }\r
+ }\r
+ });\r
+ useProxy.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
+ useProxy.setHorizontalAlignment(SwingConstants.RIGHT);\r
+ useProxy.setHorizontalTextPosition(SwingConstants.LEADING);\r
+ useProxy.setText("Use a proxy server");\r
+ useProxy.addActionListener(new ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ useProxy_actionPerformed();\r
+ }\r
+ });\r
+ jPanel1.setBorder(titledBorder1);\r
+ jPanel1.setLayout(gridBagLayout1);\r
+ visualTab.add(annotations);\r
+ visualTab.add(conservation);\r
+ visualTab.add(quality);\r
+ visualTab.add(fullID);\r
+ visualTab.add(gapSymbolCB);\r
+ visualTab.add(fontLabel);\r
+ visualTab.add(fontNameCB);\r
+ visualTab.add(colourLabel);\r
+ visualTab.add(gapLabel);\r
+ visualTab.add(colour);\r
+ visualTab.add(fontSizeCB);\r
+ visualTab.add(fontStyleCB);\r
+ visualTab.add(identity);\r
+ visualTab.add(fullScreen);\r
+ visualTab.add(startupCheckbox);\r
+ visualTab.add(startupFileTextfield);\r
+\r
+ tabbedPane.add(visualTab, "Visual");\r
+ tabbedPane.add(connectTab, "Connections");\r
+\r
+ linkPanel.add(editLinkButtons, BorderLayout.EAST);\r
+ editLinkButtons.add(newLink, null);\r
+ editLinkButtons.add(editLink, null);\r
+ editLinkButtons.add(deleteLink, null);\r
+ linkPanel.add(linkScrollPane, BorderLayout.CENTER);\r
+ linkScrollPane.getViewport().add(linkPanel2, null);\r
+ linkPanel2.add(linkURLList, BorderLayout.CENTER);\r
+ linkPanel2.add(linkNameList, BorderLayout.WEST);\r
+ okCancelPanel.add(ok);\r
+ okCancelPanel.add(cancel);\r
+ this.add(tabbedPane, java.awt.BorderLayout.CENTER);\r
\r
- DefaultListCellRenderer dlcr = new DefaultListCellRenderer();\r
+ this.add(okCancelPanel, java.awt.BorderLayout.SOUTH);\r
+ jPanel1.add(serverLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0\r
+ , GridBagConstraints.WEST, GridBagConstraints.NONE,\r
+ new Insets(0, 2, 4, 0), 5, 0));\r
+ jPanel1.add(portLabel, new GridBagConstraints(2, 1, 1, 1, 0.0, 0.0\r
+ , GridBagConstraints.WEST,\r
+ GridBagConstraints.NONE,\r
+ new Insets(0, 0, 4, 0), 11, 6));\r
+ connectTab.add(linkPanel, new GridBagConstraints(0, 0, 2, 1, 1.0, 1.0\r
+ , GridBagConstraints.CENTER, GridBagConstraints.BOTH,\r
+ new Insets(16, 0, 0, 12), 359, -17));\r
+ connectTab.add(jPanel1, new GridBagConstraints(0, 2, 2, 1, 1.0, 1.0\r
+ , GridBagConstraints.CENTER, GridBagConstraints.BOTH,\r
+ new Insets(21, 0, 35, 12), 4, 6));\r
+ connectTab.add(browserLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0\r
+ , GridBagConstraints.WEST, GridBagConstraints.NONE,\r
+ new Insets(16, 0, 0, 0), 5, 1));\r
+ jPanel1.add(proxyPortTB, new GridBagConstraints(3, 1, 1, 1, 1.0, 0.0\r
+ , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
+ new Insets(0, 2, 4, 2), 54, 1));\r
+ jPanel1.add(proxyServerTB, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0\r
+ , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
+ new Insets(0, 2, 4, 0), 263, 1));\r
+ connectTab.add(defaultBrowser, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0\r
+ , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
+ new Insets(15, 0, 0, 15), 307, 1));\r
+ jPanel1.add(useProxy, new GridBagConstraints(0, 0, 2, 1, 0.0, 0.0\r
+ , GridBagConstraints.WEST,\r
+ GridBagConstraints.NONE,\r
+ new Insets(0, 2, 5, 185), 2,\r
+ -4));\r
+ DefaultListCellRenderer dlcr = new DefaultListCellRenderer();\r
dlcr.setHorizontalAlignment(DefaultListCellRenderer.CENTER);\r
gapSymbolCB.setRenderer(dlcr);\r
}\r
{\r
}\r
\r
- /**\r
- * DOCUMENT ME!\r
- *\r
- * @param e DOCUMENT ME!\r
- */\r
- public void jCheckBox1_actionPerformed(ActionEvent e)\r
- {\r
- }\r
\r
/**\r
* DOCUMENT ME!\r
public void startupFileTextfield_mouseClicked()\r
{\r
}\r
+\r
+\r
+ public void newLink_actionPerformed(ActionEvent e) {\r
+\r
+ }\r
+\r
+ public void editLink_actionPerformed(ActionEvent e) {\r
+\r
+ }\r
+\r
+ public void deleteLink_actionPerformed(ActionEvent e) {\r
+\r
+ }\r
+\r
+ public void defaultBrowser_mouseClicked(MouseEvent e)\r
+ {\r
+\r
+ }\r
+\r
+ public void linkURLList_keyTyped(KeyEvent e)\r
+ {\r
+\r
+ }\r
+\r
+ public void useProxy_actionPerformed()\r
+ {\r
+ proxyServerTB.setEnabled(useProxy.isSelected());\r
+ proxyPortTB.setEnabled(useProxy.isSelected());\r
+ }\r
}\r
git://source.jalview.org / jalview.git / commitdiff