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JAL-2792 test updated for 3 column table
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Tue, 31 Oct 2017 15:24:27 +0000 (15:24 +0000)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Tue, 31 Oct 2017 15:24:27 +0000 (15:24 +0000)
test/jalview/datamodel/SequenceFeatureTest.java patch | blob | history

diff --git a/test/jalview/datamodel/SequenceFeatureTest.java b/test/jalview/datamodel/SequenceFeatureTest.java
index 8c9cbc9..c955979 100644 (file)
--- a/test/jalview/datamodel/SequenceFeatureTest.java
+++ b/test/jalview/datamodel/SequenceFeatureTest.java
@@ -279,30 +279,30 @@ public class SequenceFeatureTest
   {
     // single locus, no group, no score
     SequenceFeature sf = new SequenceFeature("variant", "G,C", 22, 22, null);
-    String expected = "<br><table><tr><td>Type</td><td>variant</td></tr>"
-            + "<tr><td>Start/end</td><td>22</td></tr>"
-            + "<tr><td>Description</td><td>G,C</td></tr></table>";
+    String expected = "<br><table><tr><td>Type</td><td>variant</td><td></td></tr>"
+            + "<tr><td>Start/end</td><td>22</td><td></td></tr>"
+            + "<tr><td>Description</td><td>G,C</td><td></td></tr></table>";
     assertEquals(expected, sf.getDetailsReport());
 
     // contact feature
     sf = new SequenceFeature("Disulphide Bond", "a description", 28, 31,
             null);
-    expected = "<br><table><tr><td>Type</td><td>Disulphide Bond</td></tr>"
-            + "<tr><td>Start/end</td><td>28:31</td></tr>"
-            + "<tr><td>Description</td><td>a description</td></tr></table>";
+    expected = "<br><table><tr><td>Type</td><td>Disulphide Bond</td><td></td></tr>"
+            + "<tr><td>Start/end</td><td>28:31</td><td></td></tr>"
+            + "<tr><td>Description</td><td>a description</td><td></td></tr></table>";
     assertEquals(expected, sf.getDetailsReport());
 
     sf = new SequenceFeature("variant", "G,C", 22, 33,
             12.5f, "group");
     sf.setValue("Parent", "ENSG001");
     sf.setValue("Child", "ENSP002");
-    expected = "<br><table><tr><td>Type</td><td>variant</td></tr>"
-            + "<tr><td>Start/end</td><td>22-33</td></tr>"
-            + "<tr><td>Description</td><td>G,C</td></tr>"
-            + "<tr><td>Score</td><td>12.5</td></tr>"
-            + "<tr><td>Group</td><td>group</td></tr>"
-            + "<tr><td>Child</td><td>ENSP002</td></tr>"
-            + "<tr><td>Parent</td><td>ENSG001</td></tr></table>";
+    expected = "<br><table><tr><td>Type</td><td>variant</td><td></td></tr>"
+            + "<tr><td>Start/end</td><td>22-33</td><td></td></tr>"
+            + "<tr><td>Description</td><td>G,C</td><td></td></tr>"
+            + "<tr><td>Score</td><td>12.5</td><td></td></tr>"
+            + "<tr><td>Group</td><td>group</td><td></td></tr>"
+            + "<tr><td>Child</td><td></td><td>ENSP002</td></tr>"
+            + "<tr><td>Parent</td><td></td><td>ENSG001</td></tr></table>";
     assertEquals(expected, sf.getDetailsReport());
 
     /*
@@ -310,10 +310,10 @@ public class SequenceFeatureTest
      */
     String desc = "<html>Fer2 Status: True Positive <a href=\"http://pfam.xfam.org/family/PF00111\">Pfam 8_8</a></html>";
     sf = new SequenceFeature("Pfam", desc, 8, 83, "Uniprot");
-    expected = "<br><table><tr><td>Type</td><td>Pfam</td></tr>"
-            + "<tr><td>Start/end</td><td>8-83</td></tr>"
-            + "<tr><td>Description</td><td>Fer2 Status: True Positive <a href=\"http://pfam.xfam.org/family/PF00111\">Pfam 8_8</a></td></tr>"
-            + "<tr><td>Group</td><td>Uniprot</td></tr></table>";
+    expected = "<br><table><tr><td>Type</td><td>Pfam</td><td></td></tr>"
+            + "<tr><td>Start/end</td><td>8-83</td><td></td></tr>"
+            + "<tr><td>Description</td><td>Fer2 Status: True Positive <a href=\"http://pfam.xfam.org/family/PF00111\">Pfam 8_8</a></td><td></td></tr>"
+            + "<tr><td>Group</td><td>Uniprot</td><td></td></tr></table>";
     assertEquals(expected, sf.getDetailsReport());
   }
 }