JAL-4420 Added some more filename extensions

diff --git a/src/jalview/util/ArgParserUtils.java b/src/jalview/util/ArgParserUtils.java
index 20230b2..a71b462 100644 (file)
--- a/src/jalview/util/ArgParserUtils.java
+++ b/src/jalview/util/ArgParserUtils.java
@@ -99,8 +99,7 @@ public class ArgParserUtils
     if (addArgs)
     {
       // now we go through the saved associated files and add them back in to
-      // the
-      // right places with the appropriate argument
+      // the right places with the appropriate argument
       for (String filename : baseInfoMap.keySet())
       {
         BaseInfo bi = baseInfoMap.get(filename);
@@ -146,9 +145,9 @@ public class ArgParserUtils
     }
 
     annotationsExtensions = new HashSet<>();
-    for (String ext : Cache
-            .getDefault("ARGPREPROCESSORANNOTATIONSEXTENSIONS",
-                    "annotation,annotations")
+    for (String ext : Cache.getDefault(
+            "ARGPREPROCESSORANNOTATIONSEXTENSIONS",
+            "annotation,annotations,jvannotation,jvannotations,gff,gff2,gff3")
             .split(","))
     {
       annotationsExtensions.add(ext);
@@ -156,7 +155,7 @@ public class ArgParserUtils
 
     featuresExtensions = new HashSet<>();
     for (String ext : Cache.getDefault("ARGPREPROCESSORFEATURESEXTENSIONS",
-            "feature,features").split(","))
+            "feature,features,jvfeature,jvfeatures").split(","))
     {
       featuresExtensions.add(ext);
     }