--- /dev/null
+Jalview Readme\r
+--------------\r
+\r
+\r
+##################\r
+\r
+To run application:\r
+\r
+java -Djava.ext.dirs=JALVIEW_HOME/lib -cp JALVIEW_HOME/jalview.jar jalview.bin.Jalview\r
+\r
+Replace JALVIEW_HOME with the full path to Jalview Installation Directory.
+\r
+##################\r
+\r
+\r
+\r
+\r
+If you use a proxy server add \r
+\r
+-Dhttp.proxyServer=YOUR.SERVER -Dhttp.proxyPort=YOURPORT\r
+\r
+If the proxy server requires authentication, add\r
+\r
+-Dhttp.proxyUser=USERNAME -Dhttp.proxyPassword=PASSWORD
\ No newline at end of file