setLayout(null);\r
\r
sr = new SequenceRenderer(av);\r
- sr.renderGaps( false );\r
+ sr.renderGaps = false;\r
sr.forOverview = true;\r
fr = new FeatureRenderer(av);\r
- fr.overview = true;\r
-\r
\r
// scale the initial size of overviewpanel to shape of alignment\r
float initialScale = (float) av.alignment.getWidth() / (float) av.alignment.getHeight();\r
}\r
\r
setPreferredSize(new Dimension(width, sequencesHeight + graphHeight));\r
- // setBoxPosition();\r
\r
Thread thread = new Thread(this);\r
thread.start();\r
\r
if (av.showSequenceFeatures)\r
{\r
- fr.featureGroups = ap.seqPanel.seqCanvas.getFeatureRenderer().featureGroups;\r
- fr.featureColours = ap.seqPanel.seqCanvas.getFeatureRenderer().featureColours;\r
- fr.transparency = ap.seqPanel.seqCanvas.getFeatureRenderer().transparency;\r
- fr.sequenceFeatures = ap.seqPanel.seqCanvas.getFeatureRenderer().sequenceFeatures;\r
+ fr.transferSettings( ap.seqPanel.seqCanvas.getFeatureRenderer() );\r
}\r
\r
int alwidth = av.alignment.getWidth();\r