padGaps moved

diff --git a/src/jalview/datamodel/AlignmentAnnotation.java b/src/jalview/datamodel/AlignmentAnnotation.java
index 20a3633..bd50cd7 100755 (executable)
--- a/src/jalview/datamodel/AlignmentAnnotation.java
+++ b/src/jalview/datamodel/AlignmentAnnotation.java
@@ -152,8 +152,10 @@ Loading...
       }
 
       if(annotations[i].displayCharacter==null)
+      {
+        padGaps = false;
         continue;
-
+      }
 
       if (annotations[i].displayCharacter.length() == 1
           && !annotations[i].displayCharacter.equals("H")