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JAL-1191 added mRNA isA transcript to SequenceOntologyLite (because
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Wed, 5 Oct 2016 10:23:53 +0000 (11:23 +0100)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Wed, 5 Oct 2016 10:23:53 +0000 (11:23 +0100)
Ensembl now returning coding features as mRNA not transcript!)

src/jalview/io/gff/SequenceOntologyLite.java patch | blob | history

diff --git a/src/jalview/io/gff/SequenceOntologyLite.java b/src/jalview/io/gff/SequenceOntologyLite.java
index b3f8161..2c972ad 100644 (file)
--- a/src/jalview/io/gff/SequenceOntologyLite.java
+++ b/src/jalview/io/gff/SequenceOntologyLite.java
@@ -51,6 +51,7 @@ public class SequenceOntologyLite implements SequenceOntologyI
     { "miRNA", "transcript" },
     { "lincRNA", "transcript" },
     { "rRNA", "transcript" },
+    { "mRNA", "transcript" },
     // there are many more sub-types of ncRNA...
     
     /*