/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
int rpos;
SequenceFeature[] features = findFeaturesAtRes(sequence
.getDatasetSequence(), rpos = sequence.findPosition(res));
- appendFeatures(tooltipText, linkImageURL.toString(), rpos, features);
+ appendFeatures(tooltipText, linkImageURL.toString(), rpos, features,this.ap.seqPanel.seqCanvas.fr.minmax);
}
if (tooltipText.length() == 6) // <html></html>
{
}
}
-
+ private Point lastp=null;
/*
* (non-Javadoc)
*
int x = event.getX(), w = getWidth();
int wdth = (w - x < 200) ? -(w / 2) : 5; // switch sides when tooltip is too
// close to edge
- Point p = (tooltipText != null && tooltipText.length() > 6) ? new Point(
+ Point p = lastp;
+ if (!event.isShiftDown() || p==null) {
+ p = (tooltipText != null && tooltipText.length() > 6) ? new Point(
event.getX() + wdth, event.getY() - 20)
: null;
+ }
/*
* TODO: try to modify position region is not obcured by tooltip
*/
- return p;
+ return lastp=p;
}
/**
* @param features
* TODO refactor to Jalview 'utilities' somehow.
*/
- public static void appendFeatures(StringBuffer tooltipText2,
+ public void appendFeatures(StringBuffer tooltipText2,
String linkImageURL, int rpos, SequenceFeature[] features)
{
+ appendFeatures(tooltipText2,linkImageURL,rpos,features,null);
+ }
+ public void appendFeatures(StringBuffer tooltipText2, String string,
+ int rpos, SequenceFeature[] features, Hashtable minmax)
+ {
String tmpString;
if (features != null)
{
}
}
}
- // TODO: check min/max range for this feature type to decide if
- // score should be shown
- if (features[i].getScore() != Float.NaN)
- {
- tooltipText2.append(" Score=" + features[i].getScore());
+ // check score should be shown
+ if (features[i].getScore() != Float.NaN) {
+ float[][] rng=(minmax==null) ? null : ((float[][])minmax.get(features[i].getType()));
+ if (rng!=null && rng[0]!=null && rng[0][0]!=rng[0][1]) {
+ tooltipText2.append(" Score=" + features[i].getScore());
+ }
}
if (features[i].getValue("status") != null)
{
SequenceGroup sgroup = null;
if (seqsel != null)
{
- seqsel = seqsel.intersect(av.alignment,
+ if (av.alignment==null)
+ {
+ jalview.bin.Cache.log.warn("alignviewport av SeqSetId="+av.getSequenceSetId()+" ViewId="+av.getViewId()+" 's alignment is NULL! returning immediatly.");
+ return;
+ }
+ sgroup = seqsel.intersect(av.alignment,
(av.hasHiddenRows) ? av.hiddenRepSequences : null);
}
if (sgroup != null && sgroup.getSize() > 0)