import jalview.datamodel.AlignmentI;
import jalview.datamodel.Annotation;
import jalview.gui.AlignFrame;
+import jalview.gui.AlignmentPanel;
import jalview.ws.jws2.jabaws2.Jws2Instance;
import jalview.ws.params.WsParamSetI;
public void updateResultAnnotation(boolean immediate)
{
-
if (immediate || !calcMan.isWorking(this) && scoremanager != null)
{
AlignmentAnnotation annotation;
- ;
Map<String, TreeSet<Score>> scoremap = scoremanager.asMap();
int alWidth = alignViewport.getAlignment().getWidth();
AlignmentI alignment;
else
{
// simple annotation row
- annotation = alignViewport.getAlignment().findOrCreateAnnotation(scr.getMethod(), true, null, null);
+ annotation = alignViewport.getAlignment()
+ .findOrCreateAnnotation(scr.getMethod(), true, null,
+ null);
Annotation[] elm = new Annotation[alWidth];
if (alWidth == gapMap.length) // scr.getScores().size())
{