formatting
authorjprocter <jprocter@compbio.dundee.ac.uk>
Wed, 20 Jun 2012 18:49:27 +0000 (19:49 +0100)
committerjprocter <jprocter@compbio.dundee.ac.uk>
Wed, 20 Jun 2012 18:49:27 +0000 (19:49 +0100)
src/jalview/ws/jws2/AAConsClient.java

index 58d0fa9..2c2c7cb 100644 (file)
@@ -4,6 +4,7 @@ import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.Annotation;
 import jalview.gui.AlignFrame;
+import jalview.gui.AlignmentPanel;
 import jalview.ws.jws2.jabaws2.Jws2Instance;
 import jalview.ws.params.WsParamSetI;
 
@@ -42,11 +43,9 @@ public class AAConsClient extends JabawsAlignCalcWorker
 
   public void updateResultAnnotation(boolean immediate)
   {
-
     if (immediate || !calcMan.isWorking(this) && scoremanager != null)
     {
       AlignmentAnnotation annotation;
-      ;
       Map<String, TreeSet<Score>> scoremap = scoremanager.asMap();
       int alWidth = alignViewport.getAlignment().getWidth();
       AlignmentI alignment;
@@ -73,7 +72,9 @@ public class AAConsClient extends JabawsAlignCalcWorker
           else
           {
             // simple annotation row
-            annotation = alignViewport.getAlignment().findOrCreateAnnotation(scr.getMethod(), true, null, null);
+            annotation = alignViewport.getAlignment()
+                    .findOrCreateAnnotation(scr.getMethod(), true, null,
+                            null);
             Annotation[] elm = new Annotation[alWidth];
             if (alWidth == gapMap.length) // scr.getScores().size())
             {