1.1 compat

diff --git a/src/jalview/datamodel/ColumnSelection.java b/src/jalview/datamodel/ColumnSelection.java
index 589c19b..3b46c47 100644 (file)
--- a/src/jalview/datamodel/ColumnSelection.java
+++ b/src/jalview/datamodel/ColumnSelection.java
@@ -1227,9 +1227,16 @@ public class ColumnSelection
         int diff = origseq.getLength() - sq.length();\r
         while (diff > 0)\r
         {\r
-          sq = sq\r
-                  + ((diff >= sb.length()) ? sb.toString() : sb\r
-                          .substring(0, diff));\r
+          //sq = sq\r
+          //        + ((diff >= sb.length()) ? sb.toString() : sb\r
+          //                .substring(0, diff));\r
+          if (diff>=sb.length()) {\r
+            sq+=sb.toString();\r
+          } else {\r
+            char[] buf = new char[diff];\r
+            sb.getChars(0, diff, buf, 0);\r
+            sq+=buf.toString();\r
+          }\r
           diff = origseq.getLength() - sq.length();\r
         }\r
       }\r