*/
public static String UP_NAME = "UNIPROT_NAME";
/**
+ * Uniprot Knowledgebase/TrEMBL
+ * as served from EMBL protein products.
+ */
+ public static final String UNIPROTKB = "UniProtKB/TrEMBL";
+ /**
* PDB Entry Code
*/
public static String PDB = "PDB";
*/
public static final String[] DNACODINGDBS = { EMBL, EMBLCDS};
public static final String[] CODINGDBS = { EMBLCDS};
- public static final String[] PROTEINDBS = { UNIPROT, PDB };
- public static final String[] PROTEINSEQ = { UNIPROT };
+ public static final String[] PROTEINDBS = { UNIPROT, PDB, UNIPROTKB};
+ public static final String[] PROTEINSEQ = { UNIPROT, UNIPROTKB};
public static final String[] PROTEINSTR = { PDB };
public static final String[] DOMAINDBS = { PFAM };
/**
if (CanonicalSourceNameLookup==null) {
CanonicalSourceNameLookup = new Hashtable();
CanonicalSourceNameLookup.put("uniprotkb/swiss-prot", jalview.datamodel.DBRefSource.UNIPROT);
+ CanonicalSourceNameLookup.put("uniprotkb/trembl", jalview.datamodel.DBRefSource.UNIPROT);
CanonicalSourceNameLookup.put("pdb", jalview.datamodel.DBRefSource.PDB);
}
String canonical = (String) CanonicalSourceNameLookup.get(source.