work on data buffer for aLeaves MAFFT suite + clean up

diff --git a/forester/java/src/org/forester/archaeopteryx/ArchaeopteryxA.java b/forester/java/src/org/forester/archaeopteryx/ArchaeopteryxA.java
index d6f9f06..837a24b 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/ArchaeopteryxA.java
+++ b/forester/java/src/org/forester/archaeopteryx/ArchaeopteryxA.java
@@ -72,7 +72,7 @@ public class ArchaeopteryxA extends JApplet {
         return getMainFrameApplet().getCurrentTreePanel().getCurrentExternalNodesDataBufferAsString();
     }
 
-    public int getCurrentExternalNodesDataBufferCounter() {
+    public int getCurrentExternalNodesDataBufferChangeCounter() {
         return getMainFrameApplet().getCurrentTreePanel().getCurrentExternalNodesDataBufferChangeCounter();
     }
 

diff --git a/forester/java/src/org/forester/archaeopteryx/ArchaeopteryxE.java b/forester/java/src/org/forester/archaeopteryx/ArchaeopteryxE.java
index b1b6d9f..d186d16 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/ArchaeopteryxE.java
+++ b/forester/java/src/org/forester/archaeopteryx/ArchaeopteryxE.java
@@ -339,7 +339,7 @@ public class ArchaeopteryxE extends JApplet implements ActionListener {
         return getCurrentTreePanel().getCurrentExternalNodesDataBufferAsString();
     }
 
-    public int getCurrentExternalNodesDataBufferCounter() {
+    public int getCurrentExternalNodesDataBufferChangeCounter() {
         return getCurrentTreePanel().getCurrentExternalNodesDataBufferChangeCounter();
     }
 

diff --git a/forester/java/src/org/forester/archaeopteryx/MainFrame.java b/forester/java/src/org/forester/archaeopteryx/MainFrame.java
index 461f474..72f2e27 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/MainFrame.java
+++ b/forester/java/src/org/forester/archaeopteryx/MainFrame.java
@@ -501,10 +501,14 @@ public abstract class MainFrame extends JFrame implements ActionListener {
         return getCurrentTreePanel().getCurrentExternalNodesDataBufferAsString();
     }
 
-    public int getExtNodeDataBufferChangeCounter() {
+    public int getCurrentExternalNodesDataBufferChangeCounter() {
         return getCurrentTreePanel().getCurrentExternalNodesDataBufferChangeCounter();
     }
 
+    public int getCurrentExternalNodesDataBufferLength() {
+        return getCurrentTreePanel().getCurrentExternalNodesDataBufferAsString().length();
+    }
+
     public InferenceManager getInferenceManager() {
         return _inference_manager;
     }