s = range.split("-")
from = s[ 0 ].to_i
to = s[ 1 ].to_i
- new_msa_domains.add_sequence( Sequence.new( orig_name + "/" + from + "-" + to + " [" + basename + "] [" + current_species + "]", seq.get_sequence_as_string[from..to] ) )
+ new_msa_domains.add_sequence( Sequence.new( orig_name + "/" + from.to_s + "-" + to.to_s + " [" + basename + "] [" + current_species + "]", seq.get_sequence_as_string[from..to] ) )
if extension > 0
from_e = from - extension
if from_e < 0
if to_e > seq.get_sequence_as_string.length - 1
to_e = seq.get_sequence_as_string.length - 1
end
- new_msa_domains_extended.add_sequence( Sequence.new( orig_name + "/" + from + "-" + to + " [ext: " + extension.to_s + "] [" + basename + "] [" + current_species + "]",
+ new_msa_domains_extended.add_sequence( Sequence.new( orig_name + "/" + from.to_s + "-" + to.to_s + " [ext: " + extension.to_s + "] [" + basename + "] [" + current_species + "]",
seq.get_sequence_as_string[ from_e..to_e ] ) )
end
end