if ( nx == null ) {
throw new RioException( "node \"" + mx + "\" not present in gene tree #" + counter );
}
+ String my;
+ PhylogenyNode ny;
for( int y = 0; y < m.size(); ++y ) {
- final String my = m.getLabel( y );
- final PhylogenyNode ny = map.get( my );
+ my = m.getLabel( y );
+ ny = map.get( my );
if ( ny == null ) {
throw new RioException( "node \"" + my + "\" not present in gene tree #" + counter );
}
return false;
}
final Phylogeny p_c = factory.create( "(((a)b)c)", new NHXParser() )[ 0 ];
- System.out.println( p_c.toNewHampshireX() );
PhylogenyMethods.preOrderReId( p_c );
final PhylogenyNode p_c_1 = PhylogenyMethods.calculateLCAonTreeWithIdsInPreOrder( p_c.getNode( "b" ),
p_c.getNode( "a" ) );
public final class ForesterConstants {
- public final static String FORESTER_VERSION = "1.007+";
- public final static String FORESTER_DATE = "121130";
+ public final static String FORESTER_VERSION = "1.008";
+ public final static String FORESTER_DATE = "121205";
public final static String PHYLO_XML_VERSION = "1.10";
public final static String PHYLO_XML_LOCATION = "http://www.phyloxml.org";
public final static String PHYLO_XML_XSD = "phyloxml.xsd";