new jalview paper

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 3e214b8..1f75bf2 100755 (executable)
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -2328,11 +2328,10 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
                         "For help, see the FAQ at www.jalview.org and/or join the jalview-discuss@jalview.org mailing list",
                         x, y += fh);
         g.drawString("If  you use Jalview, please cite:", x, y += fh + 8);
-        g
-                .drawString(
-                        "\"Clamp, M., Cuff, J., Searle, S. M. and Barton, G. J. (2004), The Jalview Java Alignment Editor\"",
-                        x, y += fh);
-        g.drawString("Bioinformatics,  2004 20;426-7.", x, y += fh);
+        g.drawString(
+                "Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009)",x,y+=fh);
+        g.drawString("Jalview Version 2 - a multiple sequence alignment editor and analysis workbench",x,y+=fh);
+        g.drawString("Bioinformatics doi: 10.1093/bioinformatics/btp033",x,y+=fh);
       }
     }
 

diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java
index 9a89b0a..5d6cb40 100755 (executable)
--- a/src/jalview/gui/Desktop.java
+++ b/src/jalview/gui/Desktop.java
@@ -626,9 +626,9 @@ public class Desktop extends jalview.jbgui.GDesktop implements
                     + "\nDevelopment managed by The Barton Group, University of Dundee, Scotland, UK.\n"
                     + "\nFor help, see the FAQ at www.jalview.org and/or join the jalview-discuss@jalview.org mailing list\n"
                     + "\nIf  you use Jalview, please cite:"
-                    + "\n\"Clamp, M., Cuff, J., Searle, S. M. and Barton, G. J. (2004), The Jalview Java Alignment Editor\""
-                    + "\nBioinformatics,  2004 20;426-7.");
-
+                    + "\nWaterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009)"
+                    + "\nJalview Version 2 - a multiple sequence alignment editor and analysis workbench"
+                    + "\nBioinformatics doi: 10.1093/bioinformatics/btp033");
     JOptionPane.showInternalMessageDialog(Desktop.desktop,
 
     message.toString(), "About Jalview", JOptionPane.INFORMATION_MESSAGE);

diff --git a/src/jalview/gui/SplashScreen.java b/src/jalview/gui/SplashScreen.java
index 6fc4262..9e98d42 100755 (executable)
--- a/src/jalview/gui/SplashScreen.java
+++ b/src/jalview/gui/SplashScreen.java
@@ -212,11 +212,15 @@ public class SplashScreen extends JPanel implements Runnable
                     50, y += fontSize + 4);
     g
             .drawString(
-                    "If  you use Jalview, please cite: Clamp, M., Cuff, J., Searle, S. M. and Barton, G. J. (2004),",
-                    50, y += fontSize + 4);
+                    "If  you use Jalview, please cite: ",50,y+=fontSize+4);
     g
             .drawString(
-                    "\"The Jalview Java Alignment Editor\" Bioinformatics,  2004 20; 426-7.",
-                    50, y += fontSize + 4);
+                    "Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009)",50,y+=fontSize+4);
+    g
+            .drawString(
+                    "Jalview Version 2 - a multiple sequence alignment editor and analysis workbench",50,y+=fontSize+4);
+    g
+            .drawString(
+                    "Bioinformatics doi: 10.1093/bioinformatics/btp033",50,y+=fontSize+4);
   }
 }