Residue tmpres = residues.lastElement();
Atom tmpat = tmpres.atoms.get(0);
// Make A new SequenceFeature for the current residue numbering
- SequenceFeature sf = new SequenceFeature("RES NUM", tmpat.resName
+ SequenceFeature sf = new SequenceFeature("RESNUM", tmpat.resName
+ ":" + tmpat.resNumIns + " " + pdbid + id, "", offset
+ count, offset + count, pdbid);
// MCview.PDBChain.PDBFILEFEATURE);
String expected = "Score = 320\nLength of alignment = 10\nSequence Seq1 : 3 - 18 (Sequence length = 14)\nSequence Seq1 : 1 - 10 (Sequence length = 10)\n\n"
+ "Seq1 SDFAQQQRRR\n"
+ " ||||||| \n"
- + "Seq1 SDFAQQQSSS\n\n" + "Percentage ID = 70.00\n\n";
+ + "Seq1 SDFAQQQSSS\n\n" + "Percentage ID = 70.00\n";
assertEquals(expected, baos.toString());
}
}