DB seqs may be lower or upper case

diff --git a/src/jalview/io/DBRefFetcher.java b/src/jalview/io/DBRefFetcher.java
index 805e78d..d57f3be 100644 (file)
--- a/src/jalview/io/DBRefFetcher.java
+++ b/src/jalview/io/DBRefFetcher.java
@@ -292,7 +292,7 @@ public class DBRefFetcher implements Runnable
       System.out.println("Adding dbref to "+sequence[m].getName()+" : "+\r
                          entry.getAccession().elementAt(0).toString());\r
 \r
-      String nonGapped = AlignSeq.extractGaps("-. ", sequence[m].getSequence());\r
+      String nonGapped = AlignSeq.extractGaps("-. ", sequence[m].getSequence()).toUpperCase();\r
 \r
       int absStart = entry.getUniprotSequence().getContent().indexOf(\r
           nonGapped.toString());\r