Watch out for - symbol lin jnet files

diff --git a/src/jalview/datamodel/AlignmentAnnotation.java b/src/jalview/datamodel/AlignmentAnnotation.java
index 7c57e6b..d6eb3ea 100755 (executable)
--- a/src/jalview/datamodel/AlignmentAnnotation.java
+++ b/src/jalview/datamodel/AlignmentAnnotation.java
@@ -121,7 +121,8 @@ public class AlignmentAnnotation
         }
 
         if (annotations[i].secondaryStructure != 'H'
-            && annotations[i].secondaryStructure != 'E')
+            && annotations[i].secondaryStructure != 'E'
+            && annotations[i].secondaryStructure != '-')
         {
           nonSSLabel = true;
         }