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Edited wiki page rio through web user interface.
authorcmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Wed, 28 Nov 2012 23:06:01 +0000 (23:06 +0000)
committercmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Wed, 28 Nov 2012 23:06:01 +0000 (23:06 +0000)
wiki/rio.wiki patch | blob | history

diff --git a/wiki/rio.wiki b/wiki/rio.wiki
index ab4155c..76a4ae7 100644 (file)
--- a/wiki/rio.wiki
+++ b/wiki/rio.wiki
@@ -25,6 +25,11 @@ path/to/forester.jar org.forester.application.rio [options] <gene trees file> <s
 
   * -cu: cutoff for ultra-paralog output (default: 50)
 
+==== Sort ====
+
+  0: orthologies
+  1: orthologies > super orthologies
+  2: super orthologies > orthologies
 
 ==== Gene tree ====
 Must be in phyloXM format, with taxonomy and sequence data in appropriate fields ([http://forester.googlecode.com/files/wnt_gene_tree.xml example]).