import jalview.io.FileLoader;
import jalview.io.FormatAdapter;
-import org.testng.AssertJUnit;
+import org.testng.Assert;
import org.testng.annotations.Test;
public class FeatureScoreModelTest
AlignFrame alf = new FileLoader(false).LoadFileWaitTillLoaded(
alntestFile, FormatAdapter.PASTE);
AlignmentI al = alf.getViewport().getAlignment();
- AssertJUnit.assertEquals(4, al.getHeight());
- AssertJUnit.assertEquals(5, al.getWidth());
+ Assert.assertEquals(al.getHeight(), 4);
+ Assert.assertEquals(al.getWidth(), 5);
for (int i = 0; i < 4; i++)
{
SequenceI ds = al.getSequenceAt(i).getDatasetSequence();
alf.getFeatureRenderer().setVisible("sf2");
alf.getFeatureRenderer().setVisible("sf3");
alf.getFeatureRenderer().findAllFeatures(true);
- AssertJUnit.assertEquals("Number of feature types", 3, alf
- .getFeatureRenderer().getDisplayedFeatureTypes().size());
- AssertJUnit.assertTrue(alf.getCurrentView().areFeaturesDisplayed());
+ Assert.assertEquals(alf.getFeatureRenderer().getDisplayedFeatureTypes()
+ .size(), 3, "Number of feature types");
+ Assert.assertTrue(alf.getCurrentView().areFeaturesDisplayed());
FeatureScoreModel fsm = new FeatureScoreModel();
- AssertJUnit.assertTrue(fsm.configureFromAlignmentView(alf
+ Assert.assertTrue(fsm.configureFromAlignmentView(alf
.getCurrentView().getAlignPanel()));
alf.selectAllSequenceMenuItem_actionPerformed(null);
float[][] dm = fsm.findDistances(alf.getViewport().getAlignmentView(
true));
- AssertJUnit.assertTrue("FER1_MESCR should be identical with RAPSA (2)",
- dm[0][2] == 0f);
- AssertJUnit
- .assertTrue(
- "FER1_MESCR should be further from SPIOL (1) than it is from RAPSA (2)",
- dm[0][1] > dm[0][2]);
+ Assert.assertTrue(dm[0][2] == 0f,
+ "FER1_MESCR (0) should be identical with RAPSA (2)");
+ Assert.assertTrue(dm[0][1] > dm[0][2],
+ "FER1_MESCR (0) should be further from SPIOL (1) than it is from RAPSA (2)");
}
}