JAL-4449 signed off and also updated Ensembl REST API version after fixing the Ensemb...

diff --git a/src/jalview/ext/ensembl/EnsemblRestClient.java b/src/jalview/ext/ensembl/EnsemblRestClient.java
index 3cc778a..9521305 100644 (file)
--- a/src/jalview/ext/ensembl/EnsemblRestClient.java
+++ b/src/jalview/ext/ensembl/EnsemblRestClient.java
@@ -70,9 +70,9 @@ abstract class EnsemblRestClient extends EnsemblSequenceFetcher
    * @see https://github.com/Ensembl/ensembl-rest/wiki/Change-log
    * @see http://rest.ensembl.org/info/rest?content-type=application/json
    */
-  private static final String LATEST_ENSEMBLGENOMES_REST_VERSION = "15.2";
+  private static final String LATEST_ENSEMBLGENOMES_REST_VERSION = "15.8";
 
-  private static final String LATEST_ENSEMBL_REST_VERSION = "15.2";
+  private static final String LATEST_ENSEMBL_REST_VERSION = "15.8";
 
   private static final String REST_CHANGE_LOG = "https://github.com/Ensembl/ensembl-rest/wiki/Change-log";
 

diff --git a/test/jalview/ext/ensembl/EnsemblGeneTest.java b/test/jalview/ext/ensembl/EnsemblGeneTest.java
index 4a6036f..4923c8f 100644 (file)
--- a/test/jalview/ext/ensembl/EnsemblGeneTest.java
+++ b/test/jalview/ext/ensembl/EnsemblGeneTest.java
@@ -326,7 +326,10 @@ public class EnsemblGeneTest
     assertTrue(geneIds.contains("ENSRNOG00000010957")); // rat
     assertTrue(geneIds.contains("ENSXETG00000004845")); // xenopus
     assertTrue(geneIds.contains("ENSDARG00000017661")); // zebrafish
-    assertTrue(geneIds.contains("ENSGALG00000012865")); // chicken
+    // was ENSGALG00000012865 - which is still the canonical uniprot BRAF cross
+    // reference via GRCg6a
+    assertTrue(geneIds.contains("ENSGALG00010013466")); // chicken BRAF
+                                                        // bGalGal1.mat.broiler.GRCg7b
     assertEquals(8, geneIds.size());
 
   }