JAL-3466 higher ‘crummy alignment’ threshold when deciding to create an identity...

diff --git a/src/jalview/structure/StructureSelectionManager.java b/src/jalview/structure/StructureSelectionManager.java
index 6761cc3..9906582 100644 (file)
--- a/src/jalview/structure/StructureSelectionManager.java
+++ b/src/jalview/structure/StructureSelectionManager.java
@@ -673,7 +673,7 @@ public class StructureSelectionManager
         // Not doing SIFTS, or SIFTS failed for some reason.
         
         // first check if we should use an identity mapping
-        if (idLengthChain != null && maxAlignseq.getS2Coverage() < 0.5)
+        if (idLengthChain != null && maxAlignseq.getS2Coverage() < 0.75)
         {
           Console.info(
                   "Assuming 3Dsi identity mapping between structure and sequence");