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JAL-653 JAL-1705 set strand for GFF sequence feature
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Thu, 21 Jan 2016 15:57:43 +0000 (15:57 +0000)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Thu, 21 Jan 2016 15:57:43 +0000 (15:57 +0000)
src/jalview/io/gff/GffHelperBase.java patch | blob | history

diff --git a/src/jalview/io/gff/GffHelperBase.java b/src/jalview/io/gff/GffHelperBase.java
index fbde9d9..6d9327b 100644 (file)
--- a/src/jalview/io/gff/GffHelperBase.java
+++ b/src/jalview/io/gff/GffHelperBase.java
@@ -333,6 +333,8 @@ public abstract class GffHelperBase implements GffHelperI
       SequenceFeature sf = new SequenceFeature(gff[TYPE_COL],
               gff[SOURCE_COL], start, end, score, gff[SOURCE_COL]);
 
+      sf.setStrand(gff[STRAND_COL]);
+
       if (attributes != null)
       {
         /*