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eafcdaa
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dont set seqref null if index incorrect
author
amwaterhouse
<Andrew Waterhouse>
Wed, 18 Apr 2007 13:35:07 +0000
(13:35 +0000)
committer
amwaterhouse
<Andrew Waterhouse>
Wed, 18 Apr 2007 13:35:07 +0000
(13:35 +0000)
src/jalview/io/AnnotationFile.java
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diff --git
a/src/jalview/io/AnnotationFile.java
b/src/jalview/io/AnnotationFile.java
index
2053fef
..
2ce076a
100755
(executable)
--- a/
src/jalview/io/AnnotationFile.java
+++ b/
src/jalview/io/AnnotationFile.java
@@
-367,7
+367,6
@@
public class AnnotationFile
catch (Exception ex)
\r
{
\r
refSeqIndex = 1;
\r
- refSeq=null;
\r
}
\r
\r
continue ;
\r
@@
-433,6
+432,7
@@
public class AnnotationFile
\r
if (refSeq != null)
\r
{
\r
+ System.out.println(refSeq.getName()+" "+refSeqIndex);
\r
annotation.createSequenceMapping(refSeq, refSeqIndex, false);
\r
annotation.adjustForAlignment();
\r
refSeq.addAlignmentAnnotation(annotation);
\r