Add docs in build

diff --git a/utils/InstallAnywhere/Jalview.iap_xml b/utils/InstallAnywhere/Jalview.iap_xml
index 7e842e1..9d27621 100755 (executable)
--- a/utils/InstallAnywhere/Jalview.iap_xml
+++ b/utils/InstallAnywhere/Jalview.iap_xml
@@ -1,8 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!-- This script was automatically generated using Zero G's InstallAnywhere 6.1 Standard, Build 2325
      STATUS: Fully Functional LICENSED Edition
-     DATE:   Mon Jul 18 12:08:11 BST 2005 -->
-<InstallAnywhere_Deployment_Project increments="1759">
+     DATE:   Thu Aug 04 09:15:47 BST 2005 -->
+<InstallAnywhere_Deployment_Project increments="1800">
        <!-- ** DO NOT EDIT ** Essential authorization and configuration data ** DO NOT EDIT ** -->
        <essentialScriptInfo>
                <versionID major="6" minor="1" revision="-1"/>
@@ -10,9 +10,9 @@
                <scriptID>12,42,11,90,89,49,55,52,54,54,82,71,76,82,76,68</scriptID>
                <buildID>3,13,71,76,105,110,117,120,44,32,50,46,52,46,50,53,45,57,109,100,107,115,109,112,44,32,105,51,56,54,59,32,74,97,118,97,32,49,46,51,46,49,95,48,57,44,32,83,117,110,32,77,105,99,114,111,115,121,115,116,101,109,115,32,73,110,99,46,44,32,104,116,116,112,58,47,47,106,97,118,97,46,115,117,110,46,99,111,109,47,59,32,101,110,44,32,71,66,59,32,73,83,79,45,56,56,53,57,45,49</buildID>
                <!-- The authorizationID may change between project saves and builds.  This does not effect the integrity of the project, nor do changes in this value represent changes in the actual InstallAnywhere project. -->
-               <authorizationID>1,0,0,0,35,-95,32,16,80,112,116,103,88,98,113,97,113,81,67,49,74,65,70,70,85,71,64,69,66,69,48,79,87,5,2,6,8,33,121,5,1,0,0</authorizationID>
+               <authorizationID>1,0,0,0,-125,-125,96,-96,80,112,116,103,88,98,113,97,113,81,67,49,74,65,70,70,85,71,64,69,66,69,48,79,87,5,2,10,11,47,112,5,1,0,0</authorizationID>
        </essentialScriptInfo>
-       <installationObjects uniqueObjects="91">
+       <installationObjects uniqueObjects="93">
                <object class="com.zerog.ia.installer.Installer" objectID="fe7d63eda660">
                        <property name="wizardME">
                                <object class="com.zerog.ia.installer.actions.MakeExecutable" objectID="3cd8e2ffa671">
@@ -166,7 +166,7 @@ it will search for ones in this list]]></string>
                                                                </object>
                                                        </method>
                                                        <method name="addElement">
-                                                               <object class="com.zerog.ia.installer.util.LAXPropertyData" objectID="3d0f7b75a66b">
+                                                               <object class="com.zerog.ia.installer.util.LAXPropertyData" objectID="940e08af871b">
                                                                        <property name="propertyValue">
                                                                                <string><![CDATA[jalview.bin.Jalview]]></string>
                                                                        </property>
@@ -281,7 +281,7 @@ and any path to a file to save to the file]]></string>
                                                                <string><![CDATA[jalview.jar]]></string>
                                                        </property>
                                                        <property name="fileSize">
-                                                               <long>881189</long>
+                                                               <long>938476</long>
                                                        </property>
                                                        <property name="macBinary">
                                                                <boolean>false</boolean>
@@ -1250,7 +1250,7 @@ Press "Done" to quit the installer.]]></string>
                                        </method>
                                        <method name="put">
                                                <string><![CDATA[com.zerog.ia.project.build.last.date]]></string>
-                                               <string><![CDATA[18 July 2005 12:08:11 o'clock BST]]></string>
+                                               <string><![CDATA[18 July 2005 17:25:03 o'clock BST]]></string>
                                        </method>
                                        <method name="put">
                                                <string><![CDATA[com.zerog.ia.build.platform.windows.vm]]></string>
@@ -1310,7 +1310,7 @@ Press "Done" to quit the installer.]]></string>
                                        </method>
                                        <method name="put">
                                                <string><![CDATA[com.zerog.ia.project.save.last.date]]></string>
-                                               <string><![CDATA[18 July 2005 12:08:11 o'clock BST]]></string>
+                                               <string><![CDATA[04 August 2005 09:15:46 o'clock BST]]></string>
                                        </method>
                                        <method name="put">
                                                <string><![CDATA[com.zerog.ia.build.options.optimization.platform.cdrom]]></string>
@@ -1489,7 +1489,7 @@ Press "Done" to quit the installer.]]></string>
                                                <int>0</int>
                                        </property>
                                        <property name="productVersionRevision">
-                                               <int>1</int>
+                                               <int>2</int>
                                        </property>
                                        <property name="productVersionSubRevision">
                                                <int>0</int>
@@ -2080,7 +2080,7 @@ and any path to a file to read from that file]]></string>
                                                                                                <string><![CDATA[README]]></string>
                                                                                        </property>
                                                                                        <property name="fileSize">
-                                                                                               <long>935</long>
+                                                                                               <long>869</long>
                                                                                        </property>
                                                                                        <property name="macBinary">
                                                                                                <boolean>false</boolean>
@@ -2089,6 +2089,67 @@ and any path to a file to read from that file]]></string>
                                                                                                <int>0</int>
                                                                                        </property>
                                                                                </object>
+                                                                               <object class="com.zerog.ia.installer.actions.InstallFile" objectID="941057c3871e">
+                                                                                       <property name="unixPermissions">
+                                                                                               <string><![CDATA[664]]></string>
+                                                                                       </property>
+                                                                                       <property name="sourceName">
+                                                                                               <string><![CDATA[building.html]]></string>
+                                                                                       </property>
+                                                                                       <property name="overrideUnixPermissions">
+                                                                                               <boolean>false</boolean>
+                                                                                       </property>
+                                                                                       <property name="sourcePath">
+                                                                                               <string><![CDATA[/homes/andrew/jalview/doc/]]></string>
+                                                                                       </property>
+                                                                                       <property name="shouldUninstall">
+                                                                                               <boolean>true</boolean>
+                                                                                       </property>
+                                                                                       <property name="destinationName">
+                                                                                               <string><![CDATA[building.html]]></string>
+                                                                                       </property>
+                                                                                       <property name="fileSize">
+                                                                                               <long>-1</long>
+                                                                                       </property>
+                                                                                       <property name="macBinary">
+                                                                                               <boolean>false</boolean>
+                                                                                       </property>
+                                                                                       <property name="targetCheckKind">
+                                                                                               <int>0</int>
+                                                                                       </property>
+                                                                               </object>
+                                                                               <object class="com.zerog.ia.installer.actions.InstallDirectory" objectID="941057c0871e">
+                                                                                       <property name="unixPermissions">
+                                                                                               <string><![CDATA[775]]></string>
+                                                                                       </property>
+                                                                                       <property name="sourceName">
+                                                                                               <string><![CDATA[]]></string>
+                                                                                       </property>
+                                                                                       <property name="overrideUnixPermissions">
+                                                                                               <boolean>false</boolean>
+                                                                                       </property>
+                                                                                       <property name="sourcePath">
+                                                                                               <string><![CDATA[/homes/andrew/jalview/doc]]></string>
+                                                                                       </property>
+                                                                                       <property name="shouldUninstall">
+                                                                                               <boolean>true</boolean>
+                                                                                       </property>
+                                                                                       <property name="destinationName">
+                                                                                               <string><![CDATA[doc]]></string>
+                                                                                       </property>
+                                                                                       <property name="removeRecursively">
+                                                                                               <boolean>false</boolean>
+                                                                                       </property>
+                                                                                       <property name="totalSize">
+                                                                                               <long>1</long>
+                                                                                       </property>
+                                                                                       <property name="macBinary">
+                                                                                               <boolean>false</boolean>
+                                                                                       </property>
+                                                                                       <visualChildren>
+                                                                                               <object refID="941057c3871e"/>
+                                                                                       </visualChildren>
+                                                                               </object>
                                                                        </installChildren>
                                                                </object>
                                                                <object class="com.zerog.ia.installer.InstallComponent" objectID="fe7d6497a66b">
@@ -2234,6 +2295,7 @@ and any path to a file to read from that file]]></string>
                                                <object refID="3d17753aa673"/>
                                                <object refID="3d177539a673"/>
                                                <object refID="24485f85a670"/>
+                                               <object refID="941057c0871e"/>
                                        </visualChildren>
                                </object>
                                <object class="com.zerog.ia.installer.GhostDirectory" objectID="3cd94e29a677">