main: "jalview.bin.JalviewJS2",
core: "NONE",
readyFunction: null,
- serverURL: 'https://chemapps.stolaf.edu/jmol/jsmol/php/jsmol2.php',
+ serverURL: 'https://chemapps.stolaf.edu/jmol/jsmol/php/jsmol.php',
j2sPath: 'swingjs/j2s',
console:'sysoutdiv',
allowjavascript: true,
- //JalviewJS-specific:
- jalview_SCREEN_WIDTH: 300, // desktop width
- jalview_SCREEN_HEIGHT: 1, // desktop height -- 0 to hide
+ //Jalview-specific:
+ // note that desktop-frame-div has been set to display:none
+ jalview_SCREEN_WIDTH: 100, // desktop width -- 0 to hide
+ jalview_SCREEN_HEIGHT: 70, // desktop height -- 0 to hide
jalview_SCREEN_X: 10,
jalview_SCREEN_Y: 10,
jalview_EMBEDDED: true
</script>
</head>
<body>
-<div id="align-frame-div" style="position:absolute;left:100px;top:100px;width:600px;height:400px;">
+<table><tr><td>
+<!-- note that the desktop must have a z-index ge 1000 because it is the root of all popups -->
+<div id="jalview-desktop-div" style="z-index:1000;position:relative;top:0px;left:0px;width:300px;height:70px">desktop here</div>
+</td></tr><tr><td>
+<div id="jalview-alignment-div" style="position:relative;top:0px;left:0px;width:600px;height:400px">
The alignment frame will appear here momentarily...
</div>
+</td></tr><tr>
+<td>
+<div id="jalview-structureviewer-div" style="position:relative;top:0px;left:0px;width:400px;height:400px">
+jalview-structureviewer-div
+</div>
+</td>
+<td>
+<div id="jalview-tree-div" style="position:relative;top:0px;left:0px;width:400px;height:400px">
+jalview-tree-div
+</div>
+</td>
+<td>
+<div id="jalview-pca-div" style="position:relative;top:0px;left:0px;width:400px;height:400px">
+jalview-pca-div
+</div>
+</td>
+
+</tr></table>
<script>