AlignmentI align;\r
AlignmentPanel ap;\r
ArrayList unknownSequences;\r
- JInternalFrame outputFrame = new JInternalFrame();\r
CutAndPasteTransfer output = new CutAndPasteTransfer();\r
StringBuffer sbuffer = new StringBuffer();\r
\r
findMissingIds(align);\r
if(sbuffer.length()>0)\r
{\r
- outputFrame.setContentPane(output);\r
output.setText("Your sequences have been matched to Uniprot. Some of the ids have been\n"\r
+"altered, most likely the start/end residue will have been updated.\n"\r
+"Save your alignment to maintain the updated id.\n\n"+sbuffer.toString());\r
- Desktop.addInternalFrame(outputFrame, "Sequence names updated ", 600,300);\r
+ Desktop.addInternalFrame(output, "Sequence names updated ", 600,300);\r
\r
}\r
\r