public static void assertDatasetIsNormalised(AlignmentI al)
{
- assertAlignmentDatasetRefs(al, null);
+ assertDatasetIsNormalised(al, null);
}
+
+ /**
+ * checks that the sequence data for an alignment's dataset is non-redundant.
+ * Fails if there are sequences with same id, sequence, start, and.
+ *
+ * @param al
+ * - alignment to verify
+ * @param message
+ * - null or message prepended to exception message.
+ */
public static void assertDatasetIsNormalised(AlignmentI al, String message)
{
if (al.getDataset()!=null)