git://source.jalview.org / jalview.git / commitdiff
? search:
summary | shortlog | log | commit | commitdiff | tree
raw | patch | inline | side by side (parent: eb9f07f)
JAL-3143 recognise lnc_RNA as transcript
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Thu, 13 Jun 2019 11:13:34 +0000 (12:13 +0100)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Thu, 13 Jun 2019 11:13:34 +0000 (12:13 +0100)
src/jalview/io/gff/SequenceOntologyLite.java patch | blob | history

diff --git a/src/jalview/io/gff/SequenceOntologyLite.java b/src/jalview/io/gff/SequenceOntologyLite.java
index 72e906c..7d354e0 100644 (file)
--- a/src/jalview/io/gff/SequenceOntologyLite.java
+++ b/src/jalview/io/gff/SequenceOntologyLite.java
@@ -70,6 +70,7 @@ public class SequenceOntologyLite implements SequenceOntologyI
     { "snRNA", "transcript" },
     { "miRNA", "transcript" },
     { "lincRNA", "transcript" },
+    { "lnc_RNA", "transcript" },
     { "rRNA", "transcript" },
     { "mRNA", "transcript" },
     // there are many more sub-types of ncRNA...