JAL-1140 use the Reader provided by the jalview.io.FileParse framework

diff --git a/src/jalview/io/RnamlFile.java b/src/jalview/io/RnamlFile.java
index b1589b6..c93201f 100644 (file)
--- a/src/jalview/io/RnamlFile.java
+++ b/src/jalview/io/RnamlFile.java
@@ -93,16 +93,7 @@ public class RnamlFile extends AlignFile
        @SuppressWarnings("unchecked")
        public void parse() throws FileNotFoundException, ExceptionPermissionDenied, ExceptionLoadingFailed, ExceptionFileFormatOrSyntax
        {
-                FileReader fr = null;
-                 fr = new FileReader(inFile); 
-                 
-                 BufferedReader r = new BufferedReader (fr);
-       
-                 //ArrayList<String> seq =new ArrayList();
-                 //System.out.println(r);
-                  
-                 
-                result = RNAFactory.loadSecStrRNAML(r);
+                result = RNAFactory.loadSecStrRNAML(getReader());
                  
                 System.out.println("this is the secondary scructure:" +result.size());
                  //System.out.println("this is the secondary scructure:" +result.toString());